Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028275 Chenopodium quinoa HOM05D001600 ORTHO05D001502 6.3e-49 197.2 106 100.0
AUR62025273 Chenopodium quinoa HOM05D001600 ORTHO05D001502 4.7e-44 181.0 106 92.5
EL10Ac8g19037 Beta vulgaris HOM05D001600 ORTHO05D001502 2.3e-35 152.1 106 79.2
Sc18g0002700 Simmondsia chinensis HOM05D001600 ORTHO05D001502 1.3e-25 119.8 81 80.2
TAR525G0004 Trochodendron aralioides HOM05D001600 ORTHO05D001502 3.5e-23 111.7 101 60.4
TAR626G0195 Trochodendron aralioides HOM05D001600 ORTHO05D001502 3.5e-23 111.7 101 60.4
CSS0023165 Camellia sinensis var. sinensis HOM05D001600 ORTHO05D001502 1.0e-22 110.2 79 70.9
CSS0008483 Camellia sinensis var. sinensis HOM05D001600 ORTHO05D001502 1.3e-22 109.8 79 70.9
Hma1.2p1_0169F.1_g074440 Hydrangea macrophylla HOM05D001600 ORTHO05D001502 3.9e-22 108.2 82 69.5
Dinv25541 Davidia involucrata HOM05D001600 ORTHO05D001502 6.6e-22 107.5 104 59.6
GSVIVG01015052001 Vitis vinifera HOM05D001600 ORTHO05D001502 6.6e-22 107.5 99 56.6
Migut.L01578 Erythranthe guttata HOM05D001600 ORTHO05D001502 2.5e-21 105.5 76 71.1
Potri.018G062600 Populus trichocarpa HOM05D001600 ORTHO05D001502 2.5e-21 105.5 84 66.7
Atru.chr7.1729 Acer truncatum HOM05D001600 ORTHO05D001502 9.5e-21 103.6 81 65.4
CsaV3_2G001080 Cucumis sativus L. HOM05D001600 ORTHO05D001502 9.5e-21 103.6 90 63.3
Gohir.A06G077800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.6e-20 102.8 79 68.4
PGR044G2246 Punica granatum HOM05D001600 ORTHO05D001502 1.6e-20 102.8 84 63.1
Peaxi162Scf00880g00319 Petunia axillaris HOM05D001600 ORTHO05D001502 2.8e-20 102.1 83 62.7
SGA_v2.0_scaffold21G09514 Striga asiatica HOM05D001600 ORTHO05D001502 3.6e-20 101.7 79 65.8
Lsat_1_v5_gn_8_85681 Lactuca sativa HOM05D001600 ORTHO05D001502 4.7e-20 101.3 114 51.8
Thecc.09G074500 Theobroma cacao HOM05D001600 ORTHO05D001502 4.7e-20 101.3 95 58.9
Actinidia39644 Actinidia chinensis HOM05D001600 ORTHO05D001502 1.8e-19 99.4 87 59.8
Nitab4.5_0000343g0400 Nicotiana tabacum HOM05D001600 ORTHO05D001502 1.8e-19 99.4 88 62.5
Nitab4.5_0003308g0010 Nicotiana tabacum HOM05D001600 ORTHO05D001502 1.8e-19 99.4 88 62.5
TWI34G1902 Tripterygium wilfordii HOM05D001600 ORTHO05D001502 1.8e-19 99.4 84 65.5
PSO421G0166 Papaver somniferum HOM05D001600 ORTHO05D001502 3.1e-19 98.6 98 59.2
CAN.G235.4 Capsicum annuum HOM05D001600 ORTHO05D001502 4.0e-19 98.2 82 62.2
Haze_26033 Corylus avellana HOM05D001600 ORTHO05D001502 4.0e-19 98.2 82 62.2
ECA236G0841 Erigeron canadensis HOM05D001600 ORTHO05D001502 4.0e-19 98.2 80 62.5
Sed0015246 Sechium edule HOM05D001600 ORTHO05D001502 5.2e-19 97.8 82 64.6
Aqoxy7G01017 Aquilegia oxysepala HOM05D001600 ORTHO05D001502 6.8e-19 97.4 96 59.4
PSO104G0006 Papaver somniferum HOM05D001600 ORTHO05D001502 6.8e-19 97.4 88 62.5
Rhsim05G0005300 Rhododendron simsii HOM05D001600 ORTHO05D001502 6.8e-19 97.4 69 71.0
Cfa002969 Carpinus fangiana HOM05D001600 ORTHO05D001502 8.9e-19 97.1 82 61.0
CiPaw.04G142100 Carya illinoinensis HOM05D001600 ORTHO05D001502 8.9e-19 97.1 82 61.0
Dinv42410 Davidia involucrata HOM05D001600 ORTHO05D001502 2.0e-18 95.9 97 52.6
CANSAT11G2466 Cannabis sativa HOM05D001600 ORTHO05D001502 4.4e-18 94.7 80 61.2
COL.COLO4_18075 Corchorus olitorius HOM05D001600 ORTHO05D001502 4.4e-18 94.7 66 74.2
Cpa.g.sc28.19 Carica papaya HOM05D001600 ORTHO05D001502 9.8e-18 93.6 80 62.5
Medtr2g042580 Medicago truncatula HOM05D001600 ORTHO05D001502 1.3e-17 93.2 83 61.4
CARHR023450 Cardamine hirsuta HOM05D001600 ORTHO05D001502 2.2e-17 92.4 75 62.7
RcHm_v2.0_Chr2g0095421 Rosa chinensis HOM05D001600 ORTHO05D001502 2.2e-17 92.4 79 65.8
Ciclev10008735m.g Citrus clementina HOM05D001600 ORTHO05D001502 3.7e-17 91.7 77 63.6
Sp5g13630 Schrenkiella parvula HOM05D001600 ORTHO05D001502 4.9e-17 91.3 78 61.5
AT1G23070 Arabidopsis thaliana HOM05D001600 ORTHO05D001502 6.4e-17 90.9 79 62.0
MELO3C004661.2 Cucumis melo HOM05D001600 ORTHO05D001502 6.4e-17 90.9 86 60.5
MD02G1095200 Malus domestica HOM05D001600 ORTHO05D001502 6.4e-17 90.9 83 65.1
Sopen07g021670 Solanum pennellii HOM05D001600 ORTHO05D001502 1.1e-16 90.1 66 68.2
MBI04_g36068_MAGBIO Magnolia biondii HOM05D001600 ORTHO05D001502 1.4e-16 89.7 103 50.5
Sabra18G0051800 Salix brachista HOM05D001600 ORTHO05D001502 1.4e-16 89.7 84 60.7
AL1G36640 Arabidopsis lyrata HOM05D001600 ORTHO05D001502 2.4e-16 89.0 79 60.8
Carub.0001s2259 Capsella rubella HOM05D001600 ORTHO05D001502 2.4e-16 89.0 79 60.8
Thhalv10011000m.g Eutrema salsugineum HOM05D001600 ORTHO05D001502 2.4e-16 89.0 79 59.5
PGSC0003DMG400016039 Solanum tuberosum HOM05D001600 ORTHO05D001502 3.2e-16 88.6 82 58.5
ATR0006G030 Amborella trichopoda HOM05D001600 ORTHO05D001502 4.1e-16 88.2 90 56.7
Ca_02215_v3 Cicer arietinum L. HOM05D001600 ORTHO05D001502 4.1e-16 88.2 86 58.1
VMungo1309G2549 Vigna mungo HOM05D001600 ORTHO05D001502 5.4e-16 87.8 83 56.6
Nn8g38594 Nelumbo nucifera HOM05D001600 ORTHO05D001502 9.2e-16 87.0 90 54.4
QL11p001140 Quercus lobata HOM05D001600 ORTHO05D001502 9.2e-16 87.0 81 58.0
Solyc07g042090.4 Solanum lycopersicum HOM05D001600 ORTHO05D001502 9.2e-16 87.0 82 58.5
Eucgr.C03304 Eucalyptus grandis HOM05D001600 ORTHO05D001502 1.2e-15 86.7 76 61.8
THA.LOC104799614 Tarenaya hassleriana HOM05D001600 ORTHO05D001502 2.1e-15 85.9 76 57.9
FvH4_1g08970 Fragaria vesca HOM05D001600 ORTHO05D001502 2.7e-15 85.5 83 60.2
arahy.Tifrunner.gnm1.ann1.ULF2Q7 Arachis hypogaea HOM05D001600 ORTHO05D001502 4.6e-15 84.7 112 47.3
DCAR_011938 Daucus carota HOM05D001600 ORTHO05D001502 4.6e-15 84.7 109 50.5
HPP92_009414 Vanilla planifolia HOM05D001600 ORTHO05D001502 4.6e-15 84.7 80 56.2
Zm00001eb019580 Zea mays HOM05D001600 ORTHO05D001502 1.0e-14 83.6 81 59.3
Aa31LG4G13250 Aethionema arabicum HOM05D001600 ORTHO05D001502 1.3e-14 83.2 77 57.1
arahy.Tifrunner.gnm1.ann1.WP4MJN Arachis hypogaea HOM05D001600 ORTHO05D001502 1.3e-14 83.2 81 56.8
vmacro17124 Vaccinium macrocarpon HOM05D001600 ORTHO05D001502 1.3e-14 83.2 90 55.6
Phvul.009G226100 Phaseolus vulgaris HOM05D001600 ORTHO05D001502 1.7e-14 82.8 80 55.0
Os03g0406900 Oryza sativa ssp. japonica HOM05D001600 ORTHO05D001502 2.3e-14 82.4 84 56.0
Lalb_Chr11g0074171 Lupinus albus HOM05D001600 ORTHO05D001502 3.0e-14 82.0 79 58.2
Gohir.D06G076800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 3.9e-14 81.6 53 79.2
Gorai.010G089900 Gossypium raimondii HOM05D001600 ORTHO05D001502 3.9e-14 81.6 53 79.2
Glyma.09G071000 Glycine max HOM05D001600 ORTHO05D001502 5.1e-14 81.3 62 67.7
Manes.16G093800 Manihot esculenta HOM05D001600 ORTHO05D001502 5.1e-14 81.3 70 65.7
unitig_699.g19264 Utricularia gibba HOM05D001600 ORTHO05D001502 8.6e-14 80.5 100 46.0
Lj6g0011436 Lotus japonicus HOM05D001600 ORTHO05D001502 1.1e-13 80.1 83 57.8
BcaC07g39326 Brassica carinata HOM05D001600 ORTHO05D001502 1.5e-13 79.7 74 60.8
A06p19270 Brassica napus HOM05D001600 ORTHO05D001502 1.5e-13 79.7 83 54.2
C08p23420 Brassica napus HOM05D001600 ORTHO05D001502 1.5e-13 79.7 74 60.8
BolC8t49970H Brassica oleracea HOM05D001600 ORTHO05D001502 1.5e-13 79.7 74 60.8
BraA06t25010Z Brassica rapa HOM05D001600 ORTHO05D001502 1.5e-13 79.7 83 54.2
Lj7C688T19 Lonicera japonica HOM05D001600 ORTHO05D001502 1.5e-13 79.7 124 45.2
BcaB01g00812 Brassica carinata HOM05D001600 ORTHO05D001502 5.6e-13 77.8 69 63.8
BcaC07g39325 Brassica carinata HOM05D001600 ORTHO05D001502 5.6e-13 77.8 69 63.8
BcaC07g39327 Brassica carinata HOM05D001600 ORTHO05D001502 5.6e-13 77.8 55 74.5
TPR.G17325 Trifolium pratense HOM05D001600 ORTHO05D001502 9.5e-13 77.0 80 55.0
SEGI_29137 Sequoiadendron giganteum HOM05D001600 ORTHO05D001502 1.6e-12 76.3 79 49.4
Cc06_g12420 Coffea canephora HOM05D001600 ORTHO05D001502 4.7e-12 74.7 81 58.0
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 4.7e-12 74.7 55 69.1
Prupe.7G196000 Prunus persica HOM05D001600 ORTHO05D001502 1.4e-11 73.2 50 74.0
Glyma.15G178900 Glycine max HOM05D001600 ORTHO05D001502 2.2e-09 65.9 62 59.7
Mapoly0025s0082 Marchantia polymorpha HOM05D001600 ORTHO05D001502 1.4e-08 63.2 68 47.1
SMO117G0312 Selaginella moellendorffii HOM05D001600 ORTHO05D001502 9.2e-08 60.5 51 49.0
COL.COLO4_17939 Corchorus olitorius HOM05D001600 ORTHO05D001502 1.2e-07 60.1 49 55.1
Dinv23705 Davidia involucrata HOM05D001600 ORTHO05D001502 1.2e-07 60.1 49 53.1
Gohir.A01G174200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.2e-07 60.1 64 46.9
Gohir.D01G165400 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.2e-07 60.1 64 46.9
Gorai.002G205800 Gossypium raimondii HOM05D001600 ORTHO05D001502 1.2e-07 60.1 64 46.9
Duzib052G0454 Durio zibethinus HOM05D001600 ORTHO05D001502 2.1e-07 59.3 49 55.1
Gohir.A12G033800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.1e-07 59.3 49 55.1
Gorai.008G040600 Gossypium raimondii HOM05D001600 ORTHO05D001502 2.1e-07 59.3 49 55.1
Thecc.02G045700 Theobroma cacao HOM05D001600 ORTHO05D001502 2.1e-07 59.3 60 48.3
unitig_21.g19999 Utricularia gibba HOM05D001600 ORTHO05D001502 2.1e-07 59.3 49 55.1
arahy.Tifrunner.gnm1.ann1.E6G5ZN Arachis hypogaea HOM05D001600 ORTHO05D001502 2.7e-07 58.9 90 40.0
arahy.Tifrunner.gnm1.ann1.KU9ZEY Arachis hypogaea HOM05D001600 ORTHO05D001502 2.7e-07 58.9 90 40.0
Gohir.D12G038700 Gossypium hirsutum HOM05D001600 ORTHO05D001502 3.5e-07 58.5 49 55.1
SEGI_32464 Sequoiadendron giganteum HOM05D001600 ORTHO05D001502 3.5e-07 58.5 57 49.1
Actinidia30234 Actinidia chinensis HOM05D001600 ORTHO05D001502 4.6e-07 58.2 100 38.0
AagrBONN_evm.TU.Sc2ySwM_117.3509 Anthoceros agrestis HOM05D001600 ORTHO05D001502 4.6e-07 58.2 74 39.2
THA.LOC104807796 Tarenaya hassleriana HOM05D001600 ORTHO05D001502 4.6e-07 58.2 69 46.4
Potri.004G204600 Populus trichocarpa HOM05D001600 ORTHO05D001502 6.0e-07 57.8 69 46.4
CiPaw.05G088600 Carya illinoinensis HOM05D001600 ORTHO05D001502 7.8e-07 57.4 60 46.7
Haze_02055 Corylus avellana HOM05D001600 ORTHO05D001502 7.8e-07 57.4 60 45.0
Gohir.A01G001500 Gossypium hirsutum HOM05D001600 ORTHO05D001502 7.8e-07 57.4 57 49.1
Gohir.D01G001200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 7.8e-07 57.4 57 49.1
Gorai.002G001700 Gossypium raimondii HOM05D001600 ORTHO05D001502 7.8e-07 57.4 57 49.1
Sabra04G0138100 Salix brachista HOM05D001600 ORTHO05D001502 1.0e-06 57.0 69 44.9
SalBow1G4733 Salvia bowleyana HOM05D001600 ORTHO05D001502 1.0e-06 57.0 69 42.0
SGA_v2.0_scaffold49G18306 Striga asiatica HOM05D001600 ORTHO05D001502 1.0e-06 57.0 49 51.0
CANSAT25G3809 Cannabis sativa HOM05D001600 ORTHO05D001502 1.3e-06 56.6 69 47.8
Ciclev10028324m.g Citrus clementina HOM05D001600 ORTHO05D001502 1.3e-06 56.6 60 45.0
Nn6g31727 Nelumbo nucifera HOM05D001600 ORTHO05D001502 1.7e-06 56.2 80 42.5
Pp3c4_13960 Physcomitrium patens HOM05D001600 ORTHO05D001502 1.7e-06 56.2 54 48.1
TAR381G0958 Trochodendron aralioides HOM05D001600 ORTHO05D001502 1.7e-06 56.2 80 42.5
Pp3c10_9420 Physcomitrium patens HOM05D001600 ORTHO05D001502 2.3e-06 55.8 61 45.9
Pp3c12_10740 Physcomitrium patens HOM05D001600 ORTHO05D001502 2.3e-06 55.8 56 48.2
VMungo1309G0169 Vigna mungo HOM05D001600 ORTHO05D001502 2.3e-06 55.8 69 47.8
Migut.H01021 Erythranthe guttata HOM05D001600 ORTHO05D001502 3.0e-06 55.5 47 55.3
Potri.009G165600 Populus trichocarpa HOM05D001600 ORTHO05D001502 3.0e-06 55.5 69 43.5
Prupe.8G177700 Prunus persica HOM05D001600 ORTHO05D001502 3.0e-06 55.5 59 44.1
GSVIVG01023892001 Vitis vinifera HOM05D001600 ORTHO05D001502 3.0e-06 55.5 73 41.1
Ah.01g023700 Amaranthus hybridus HOM05D001600 ORTHO05D001502 3.9e-06 55.1 59 42.4
Glyma.06G000800 Glycine max HOM05D001600 ORTHO05D001502 3.9e-06 55.1 69 46.4
PGR142G3536 Punica granatum HOM05D001600 ORTHO05D001502 3.9e-06 55.1 47 53.2
Hund26076 Selenicereus undatus HOM05D001600 ORTHO05D001502 3.9e-06 55.1 31 90.3
EL10Ac9g21251 Beta vulgaris HOM05D001600 ORTHO05D001502 5.1e-06 54.7 49 44.9
Cpa.g.sc20.201 Carica papaya HOM05D001600 ORTHO05D001502 5.1e-06 54.7 49 51.0
DCAR_021226 Daucus carota HOM05D001600 ORTHO05D001502 5.1e-06 54.7 49 46.9
Lsat_1_v5_gn_3_39640 Lactuca sativa HOM05D001600 ORTHO05D001502 5.1e-06 54.7 48 47.9
Phvul.009G116100 Phaseolus vulgaris HOM05D001600 ORTHO05D001502 5.1e-06 54.7 69 46.4
CDE07G0049 Ceratophyllum demersum HOM05D001600 ORTHO05D001502 6.6e-06 54.3 76 38.2
Lj1g0014703 Lotus japonicus HOM05D001600 ORTHO05D001502 6.6e-06 54.3 77 42.9
MD05G1133900 Malus domestica HOM05D001600 ORTHO05D001502 6.6e-06 54.3 59 45.8
Medtr3g118470 Medicago truncatula HOM05D001600 ORTHO05D001502 6.6e-06 54.3 69 44.9
Sc18g0005960 Simmondsia chinensis HOM05D001600 ORTHO05D001502 6.6e-06 54.3 80 41.2
TPR.G38525 Trifolium pratense HOM05D001600 ORTHO05D001502 6.6e-06 54.3 69 44.9
ATR0661G341 Amborella trichopoda HOM05D001600 ORTHO05D001502 8.6e-06 53.9 48 47.9
Aqoxy6G01704 Aquilegia oxysepala HOM05D001600 ORTHO05D001502 8.6e-06 53.9 80 42.5
FvH4_2g16560 Fragaria vesca HOM05D001600 ORTHO05D001502 8.6e-06 53.9 59 45.8
HanXRQChr10g0295371 Helianthus annuus HOM05D001600 ORTHO05D001502 8.6e-06 53.9 58 41.4
MD10G1138900 Malus domestica HOM05D001600 ORTHO05D001502 8.6e-06 53.9 75 42.7
RcHm_v2.0_Chr6g0280631 Rosa chinensis HOM05D001600 ORTHO05D001502 8.6e-06 53.9 59 45.8


User provided reference genes

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