Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.0e-279 964.1 497 100.0
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.5e-214 748.4 399 98.2
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.0e-197 693.7 423 87.9
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.6e-195 686.4 423 85.6
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 6.1e-195 684.5 417 86.6
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.0e-194 682.2 423 84.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 6.8e-194 681.0 447 83.7
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.5e-193 679.9 423 83.9
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.5e-193 679.9 423 83.9
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.0e-193 679.5 499 75.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.4e-193 678.7 423 84.6
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 9.8e-193 677.2 423 85.1
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 9.8e-193 677.2 423 84.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.3e-192 676.8 423 84.4
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 3.7e-192 675.2 423 84.2
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.7e-192 675.2 423 83.5
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 8.3e-192 674.1 423 84.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.1e-191 673.7 423 83.9
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.8e-191 672.9 423 84.9
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 2.4e-191 672.5 399 87.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 2.4e-191 672.5 423 83.9
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.1e-191 672.2 423 83.9
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.5e-190 668.7 423 82.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.0e-189 667.2 423 84.2
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.3e-189 666.8 423 82.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.7e-189 666.4 423 83.0
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 2.3e-189 666.0 423 83.0
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.3e-189 666.0 423 83.0
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 5.0e-189 664.8 422 82.7
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 6.6e-189 664.5 423 83.5
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 8.6e-189 664.1 423 82.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 8.6e-189 664.1 423 83.2
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.3e-188 662.1 423 82.3
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.3e-188 661.8 423 82.0
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.6e-188 661.4 423 82.3
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 7.3e-188 661.0 423 81.8
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.1e-187 659.4 423 82.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 2.8e-187 659.1 424 82.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.8e-187 659.1 423 82.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 6.1e-187 657.9 423 81.3
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 8.0e-187 657.5 425 82.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 8.0e-187 657.5 423 82.0
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.0e-186 657.1 423 82.3
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.4e-186 656.8 423 81.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.8e-186 656.4 423 81.1
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.3e-186 656.0 423 82.0
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.3e-186 656.0 423 82.0
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.3e-186 656.0 423 82.5
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 5.2e-186 654.8 423 81.8
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 6.8e-186 654.4 459 77.3
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.6e-185 652.5 423 81.8
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.6e-185 652.5 418 81.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.6e-185 652.5 460 77.0
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.7e-184 649.8 423 81.6
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 8.3e-184 647.5 423 81.3
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 8.3e-184 647.5 423 81.3
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.4e-183 646.7 423 81.6
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.8e-183 646.4 424 80.9
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 7.0e-183 644.4 423 79.9
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.7e-182 642.5 424 80.7
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.7e-181 639.8 467 76.2
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 3.0e-181 639.0 417 81.3
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 3.0e-181 639.0 417 81.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 5.6e-180 634.8 417 80.3
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.1e-179 632.9 417 81.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.3e-178 629.4 423 78.5
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 6.8e-178 627.9 423 78.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.9e-178 627.5 423 78.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 8.9e-178 627.5 423 79.0
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.6e-177 625.9 423 78.3
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.6e-177 625.9 423 78.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 7.5e-177 624.4 417 78.7
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 9.8e-177 624.0 423 77.8
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 2.2e-176 622.9 423 77.5
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.2e-176 622.9 423 77.8
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.2e-176 622.9 417 78.7
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.2e-176 622.9 423 77.8
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.2e-176 622.9 423 78.0
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 2.9e-176 622.5 423 77.8
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 6.4e-176 621.3 423 77.3
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.1e-175 620.5 403 82.1
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.1e-175 618.6 359 90.0
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 5.4e-175 618.2 428 76.9
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 9.2e-175 617.5 423 77.8
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 3.5e-174 615.5 356 88.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.3e-173 613.6 423 77.5
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.3e-173 613.6 423 77.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.7e-173 613.2 423 78.3
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.6e-173 610.9 423 76.6
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.8e-171 605.9 424 76.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.8e-171 605.9 424 76.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 4.7e-171 605.1 445 73.5
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-169 600.1 425 76.2
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.3e-168 597.0 447 72.7
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.3e-165 586.3 399 79.7
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.0e-165 585.9 446 72.0
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.9e-159 566.6 351 84.0
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.1e-155 553.1 423 71.4
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-153 546.6 351 82.6
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 9.9e-153 544.3 423 68.3
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.8e-146 523.5 345 81.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.4e-143 513.1 337 81.0
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 6.2e-139 498.4 312 81.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 5.5e-135 485.3 365 72.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 7.1e-135 485.0 418 61.7
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 9.6e-132 474.6 424 59.2
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.3e-123 447.6 294 83.3
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 4.8e-123 445.7 423 60.8
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 6.5e-112 408.7 278 81.3
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.9e-104 383.3 263 80.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.6e-86 324.3 278 68.0
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.7e-86 323.6 182 86.3
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.0e-86 322.0 173 91.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 2.3e-85 320.5 238 74.4
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.9e-71 274.2 199 75.4
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.5e-71 273.9 210 60.5
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.4e-69 268.1 192 77.1
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 2.4e-66 257.3 199 75.9
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.6e-60 237.3 284 50.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 5.8e-60 236.1 457 35.9
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.6e-46 191.4 107 85.0
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.1e-45 187.2 105 83.8
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 8.4e-43 179.1 111 87.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.8e-41 172.6 246 45.1
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-31 142.1 76 93.4
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 6.2e-30 136.3 282 34.0
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.1e-29 134.0 72 91.7
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.2e-28 132.1 449 29.0
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 2.0e-28 131.3 79 86.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.4e-28 130.6 72 87.5
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 9.9e-28 129.0 76 82.9
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.7e-27 128.3 72 86.1
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.4e-26 123.2 74 82.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.4e-26 123.2 385 31.7
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 7.1e-26 122.9 114 64.0
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 5.1e-24 116.7 79 77.2
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.1e-23 115.5 101 64.4
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.4e-21 107.8 57 86.0
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.2e-19 101.3 57 80.7
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 3.0e-16 90.9 92 60.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.7e-16 89.7 57 86.0
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 3.3e-15 87.4 52 88.5
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.8e-14 84.3 54 85.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 4.0e-13 80.5 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 9.0e-13 79.3 74 63.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 3.4e-12 77.4 44 95.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.2e-11 74.7 50 80.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.9e-11 74.3 45 84.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.9e-11 73.6 52 78.8
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 8.2e-06 56.2 33 84.8


User provided reference genes

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