Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 0.0e+00 1483.0 853 100.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 0.0e+00 1211.8 899 81.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.3e-136 491.5 991 43.5
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.4e-98 364.4 954 37.6
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.6e-73 280.4 242 71.9
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.4e-58 230.3 1043 31.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.2e-43 181.8 407 37.6
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.6e-17 94.7 126 43.7
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.8e-16 92.4 129 47.3
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-16 91.7 126 42.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 5.1e-16 90.9 126 44.4
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 8.8e-16 90.1 163 36.2
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.5e-15 89.4 142 41.5
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.7e-15 87.4 163 35.6
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 5.7e-15 87.4 134 44.8
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.7e-15 86.7 106 47.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.3e-14 86.3 136 41.9
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.3e-14 86.3 126 44.4
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.8e-14 85.1 124 45.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 3.7e-14 84.7 126 42.1
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 4.8e-14 84.3 128 41.4
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-13 83.2 158 38.0
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.4e-13 82.8 132 40.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.8e-13 82.4 133 40.6
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.4e-13 82.0 161 37.3
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-13 82.0 114 43.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.1e-13 81.6 105 44.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 5.3e-13 80.9 136 44.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 9.1e-13 80.1 125 44.0
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.5e-12 79.3 142 39.4
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-12 79.3 105 49.5
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.6e-12 78.6 137 40.9
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.6e-12 78.6 105 50.5
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.5e-12 77.8 56 64.3
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.5e-12 77.8 114 41.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 5.9e-12 77.4 160 33.8
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.9e-12 77.4 127 42.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 5.9e-12 77.4 124 43.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 7.7e-12 77.0 139 41.7
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.8e-11 74.7 104 45.2
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 8.5e-11 73.6 143 39.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 8.5e-11 73.6 143 39.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.5e-10 72.0 166 33.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.2e-10 71.6 216 32.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.2e-10 71.6 125 40.8
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 4.2e-10 71.2 122 43.4
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 5.5e-10 70.9 155 36.1
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 7.2e-10 70.5 266 25.2
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 7.2e-10 70.5 126 38.1
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 7.2e-10 70.5 140 35.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 9.4e-10 70.1 124 39.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 9.4e-10 70.1 441 27.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.2e-09 69.7 401 28.7
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.6e-09 69.3 109 43.1
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.6e-09 69.3 109 41.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.7e-09 68.6 111 44.1
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.6e-09 68.2 123 42.3
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 4.7e-09 67.8 122 45.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.7e-09 67.8 80 48.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 6.1e-09 67.4 112 48.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 6.1e-09 67.4 74 55.4
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 6.1e-09 67.4 74 54.1
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.0e-08 66.6 130 39.2
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.3e-08 65.5 97 43.3
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 3.0e-08 65.1 256 31.6
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.0e-08 65.1 123 37.4
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 5.1e-08 64.3 111 46.8
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.7e-08 63.9 425 25.2
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 6.7e-08 63.9 70 51.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 6.7e-08 63.9 70 51.4
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 6.7e-08 63.9 70 51.4
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 6.7e-08 63.9 70 51.4
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 6.7e-08 63.9 70 51.4
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 6.7e-08 63.9 104 43.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 6.7e-08 63.9 99 45.5
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.8e-08 63.5 125 42.4
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.1e-07 63.2 670 23.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-07 63.2 70 51.4
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.5e-07 62.8 74 50.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.0e-07 62.4 133 37.6
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.6e-07 62.0 108 42.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 4.4e-07 61.2 225 32.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 4.4e-07 61.2 122 36.1
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 4.4e-07 61.2 288 28.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 4.4e-07 61.2 135 38.5
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 4.4e-07 61.2 46 63.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.4e-07 61.2 86 46.5
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.4e-07 61.2 86 46.5
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 4.4e-07 61.2 151 33.1
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-06 59.7 299 30.4
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.7e-06 59.3 276 30.4
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.7e-06 59.3 105 40.0
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.7e-06 59.3 214 28.0
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-06 58.9 278 30.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.2e-06 58.9 140 30.0
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.7e-06 58.2 105 41.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 3.7e-06 58.2 39 74.4
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 6.3e-06 57.4 439 24.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.3e-06 57.4 121 36.4
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 8.2e-06 57.0 491 24.8


User provided reference genes

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