Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028145 Chenopodium quinoa HOM05D006062 ORTHO05D007613 1.1e-164 583.2 295 100.0
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 8.9e-109 397.5 245 87.8
EL10Ac3g05103 Beta vulgaris HOM05D006062 ORTHO05D007613 2.3e-93 346.3 265 72.5
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 7.1e-90 334.7 251 74.1
Hma1.2p1_0758F.1_g213550 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 2.4e-82 309.7 252 70.2
Rhsim09G0211900 Rhododendron simsii HOM05D006062 ORTHO05D007613 5.3e-77 292.0 255 68.6
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 1.5e-76 290.4 273 62.3
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 2.0e-76 290.0 274 64.2
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 3.4e-76 289.3 275 61.5
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 1.3e-75 287.3 275 61.5
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 1.3e-75 287.3 274 59.9
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 2.2e-75 286.6 272 59.9
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 3.8e-75 285.8 251 65.7
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 3.8e-75 285.8 274 60.9
Haze_00586 Corylus avellana HOM05D006062 ORTHO05D007613 1.9e-74 283.5 232 67.2
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.4e-74 283.1 274 60.9
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 3.2e-74 282.7 274 60.9
CSS0001214 Camellia sinensis var. sinensis HOM05D006062 ORTHO05D007613 1.2e-73 280.8 291 58.8
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 1.6e-73 280.4 266 61.7
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 1.6e-73 280.4 237 66.7
MBI04_g27273_MAGBIO Magnolia biondii HOM05D006062 ORTHO05D007613 1.6e-73 280.4 237 65.8
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 2.7e-73 279.6 272 61.8
Glyma.11G012700 Glycine max HOM05D006062 ORTHO05D007613 2.7e-73 279.6 272 61.0
Peaxi162Scf01650g00050 Petunia axillaris HOM05D006062 ORTHO05D007613 7.8e-73 278.1 270 61.5
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 1.3e-72 277.3 273 61.5
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 1.3e-72 277.3 267 59.2
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 1.7e-72 276.9 280 59.6
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 3.0e-72 276.2 275 59.6
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 8.7e-72 274.6 279 58.8
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 1.1e-71 274.2 234 66.7
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 1.5e-71 273.9 266 60.9
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 2.5e-71 273.1 276 59.8
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 2.5e-71 273.1 269 60.2
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 5.6e-71 271.9 269 59.9
C02p08780 Brassica napus HOM05D006062 ORTHO05D007613 5.6e-71 271.9 272 60.7
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 5.6e-71 271.9 272 58.1
A02p03960 Brassica napus HOM05D006062 ORTHO05D007613 7.3e-71 271.6 274 60.6
BraA02t05361Z Brassica rapa HOM05D006062 ORTHO05D007613 7.3e-71 271.6 278 60.1
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 7.3e-71 271.6 273 58.6
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 7.3e-71 271.6 272 59.9
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 9.6e-71 271.2 268 59.7
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 1.3e-70 270.8 272 59.2
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 2.1e-70 270.0 275 60.4
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 2.8e-70 269.6 276 58.0
AL6G28220 Arabidopsis lyrata HOM05D006062 ORTHO05D007613 3.6e-70 269.2 269 59.5
Cc02_g00440 Coffea canephora HOM05D006062 ORTHO05D007613 8.1e-70 268.1 258 62.4
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 8.1e-70 268.1 268 60.1
Sp6g27050 Schrenkiella parvula HOM05D006062 ORTHO05D007613 1.1e-69 267.7 272 60.3
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.4e-69 267.3 265 60.4
TPR.G37875 Trifolium pratense HOM05D006062 ORTHO05D007613 1.4e-69 267.3 273 60.1
AT5G17170 Arabidopsis thaliana HOM05D006062 ORTHO05D007613 2.4e-69 266.5 272 60.3
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 5.3e-69 265.4 268 59.3
Potri.019G042600 Populus trichocarpa HOM05D006062 ORTHO05D007613 5.3e-69 265.4 276 59.1
Solyc03g096850.4 Solanum lycopersicum HOM05D006062 ORTHO05D007613 5.3e-69 265.4 277 57.4
Sopen03g027600 Solanum pennellii HOM05D006062 ORTHO05D007613 5.3e-69 265.4 277 57.4
PGSC0003DMG400000569 Solanum tuberosum HOM05D006062 ORTHO05D007613 6.9e-69 265.0 277 57.0
CARHR196050 Cardamine hirsuta HOM05D006062 ORTHO05D007613 9.0e-69 264.6 272 59.2
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 1.2e-68 264.2 233 62.7
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 1.2e-68 264.2 254 59.4
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 1.5e-68 263.8 235 62.6
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 2.6e-68 263.1 268 60.8
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 2.6e-68 263.1 264 59.5
Psat2g187840 Pisum sativum HOM05D006062 ORTHO05D007613 3.4e-68 262.7 268 59.3
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 3.4e-68 262.7 251 61.8
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 4.5e-68 262.3 274 59.9
CAN.G303.70 Capsicum annuum HOM05D006062 ORTHO05D007613 9.9e-68 261.2 291 54.3
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 9.9e-68 261.2 261 58.6
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 1.7e-67 260.4 274 58.8
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 2.2e-67 260.0 278 57.2
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 3.8e-67 259.2 243 63.0
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 4.9e-67 258.8 282 56.4
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 4.9e-67 258.8 282 56.4
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 1.9e-66 256.9 274 57.3
Medtr5g008050 Medicago truncatula HOM05D006062 ORTHO05D007613 5.4e-66 255.4 274 57.3
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 3.5e-65 252.7 271 56.5
Lsat_1_v5_gn_8_3801 Lactuca sativa HOM05D006062 ORTHO05D007613 3.5e-65 252.7 258 60.5
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 3.5e-65 252.7 213 66.7
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 3.0e-64 249.6 268 58.2
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 3.9e-64 249.2 249 59.4
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 3.7e-62 242.7 273 54.2
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 3.7e-62 242.7 201 66.2
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 4.8e-62 242.3 272 55.5
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 6.2e-62 241.9 201 66.2
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 4.0e-61 239.2 268 54.9
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 1.2e-60 237.7 273 54.9
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 1.5e-60 237.3 209 62.7
Nitab4.5_0002302g0030 Nicotiana tabacum HOM05D006062 ORTHO05D007613 1.7e-59 233.8 236 59.7
BolC9t58838H Brassica oleracea HOM05D006062 ORTHO05D007613 4.9e-59 232.3 264 55.3
Sabra19G0053200 Salix brachista HOM05D006062 ORTHO05D007613 4.9e-59 232.3 333 46.5
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 7.1e-58 228.4 267 53.2
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 2.7e-57 226.5 215 60.0
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 2.3e-56 223.4 232 54.3
BcaC04g18827 Brassica carinata HOM05D006062 ORTHO05D007613 3.0e-56 223.0 285 52.6
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 8.2e-54 214.9 209 58.4
Dinv29176 Davidia involucrata HOM05D006062 ORTHO05D007613 1.5e-52 210.7 165 69.7
Mapoly0041s0075 Marchantia polymorpha HOM05D006062 ORTHO05D007613 1.0e-51 208.0 197 56.9
Sc25g0001120 Simmondsia chinensis HOM05D006062 ORTHO05D007613 3.8e-51 206.1 166 71.1
A10p22220 Brassica napus HOM05D006062 ORTHO05D007613 4.9e-51 205.7 180 64.4
BraA10t44281Z Brassica rapa HOM05D006062 ORTHO05D007613 4.9e-51 205.7 180 64.4
MD01G1233200 Malus domestica HOM05D006062 ORTHO05D007613 5.5e-50 202.2 190 60.5
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 7.1e-50 201.8 191 59.7
Lj3A890T59 Lonicera japonica HOM05D006062 ORTHO05D007613 2.7e-49 199.9 171 67.8
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 3.5e-49 199.5 197 56.3
FAN10G3926 Fragaria x ananassa HOM05D006062 ORTHO05D007613 1.9e-47 193.7 170 64.7
FAN10G2030 Fragaria x ananassa HOM05D006062 ORTHO05D007613 2.5e-47 193.4 170 64.7
COL.COLO4_08912 Corchorus olitorius HOM05D006062 ORTHO05D007613 4.3e-47 192.6 180 60.6
FAN01G1199 Fragaria x ananassa HOM05D006062 ORTHO05D007613 1.3e-46 191.0 170 64.7
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 2.2e-46 190.3 170 62.9
TAR375G0226 Trochodendron aralioides HOM05D006062 ORTHO05D007613 2.8e-46 189.9 176 61.9
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 3.7e-46 189.5 268 46.6
CDE02G0118 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 2.0e-44 183.7 199 55.8
Duzib187G0879 Durio zibethinus HOM05D006062 ORTHO05D007613 1.7e-43 180.6 148 65.5
unitig_52.g17697 Utricularia gibba HOM05D006062 ORTHO05D007613 1.1e-42 177.9 133 71.4
Nn1g02035 Nelumbo nucifera HOM05D006062 ORTHO05D007613 3.0e-40 169.9 135 67.4
AagrBONN_evm.TU.Sc2ySwM_117.4047 Anthoceros agrestis HOM05D006062 ORTHO05D007613 3.2e-34 149.8 196 49.5
CBR_g41688 Chara braunii HOM05D006062 ORTHO05D007613 8.8e-32 141.7 92 78.3
Nitab4.5_0000021g0330 Nicotiana tabacum HOM05D006062 ORTHO05D007613 2.8e-30 136.7 235 43.0
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 1.1e-26 124.8 220 39.5
TAR375G0371 Trochodendron aralioides HOM05D006062 ORTHO05D007613 3.7e-22 109.8 119 51.3
Oeu033092.1 Olea europaea HOM05D006062 ORTHO05D007613 1.8e-21 107.5 55 92.7
COL.COLO4_08913 Corchorus olitorius HOM05D006062 ORTHO05D007613 2.6e-20 103.6 57 86.0
PRCOL_00001509 Prasinoderma coloniale HOM05D006062 ORTHO05D007613 5.9e-20 102.4 198 34.8
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 1.0e-19 101.7 55 89.1
Cc11_g03890 Coffea canephora HOM05D006062 ORTHO05D007613 1.3e-19 101.3 167 46.1
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 3.8e-19 99.8 54 88.9
Lj3A890T58 Lonicera japonica HOM05D006062 ORTHO05D007613 1.9e-18 97.4 58 77.6
Aqoxy1G04105 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.4e-16 91.3 55 78.2
Duzib177G0960 Durio zibethinus HOM05D006062 ORTHO05D007613 8.5e-11 72.0 105 50.5
CDE02G3588 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 3.2e-10 70.1 176 34.1
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 2.3e-08 63.9 144 31.2
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 6.8e-08 62.4 55 54.5
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 1.2e-07 61.6 144 31.2
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 2.0e-07 60.8 70 45.7
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 2.6e-07 60.5 76 43.4
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 3.4e-07 60.1 75 45.3
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 4.4e-07 59.7 114 30.7
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 4.4e-07 59.7 73 43.8
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 9.8e-07 58.5 150 32.7
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 9.8e-07 58.5 150 32.7
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 9.8e-07 58.5 70 42.9
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 9.8e-07 58.5 70 42.9
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 1.3e-06 58.2 126 32.5
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 1.3e-06 58.2 80 41.2
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 1.3e-06 58.2 75 42.7
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 1.7e-06 57.8 144 30.6
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 1.7e-06 57.8 154 31.2
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 1.7e-06 57.8 161 34.2
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 1.7e-06 57.8 93 38.7
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 1.7e-06 57.8 70 42.9
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 2.2e-06 57.4 154 30.5
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 2.2e-06 57.4 150 32.0
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 41.4
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 41.4
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 2.8e-06 57.0 73 42.5
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 41.4
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 44.3
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 42.9
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 70 44.3
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 73 43.8
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 3.7e-06 56.6 70 44.3
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 70 42.9
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 74 41.9
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 3.7e-06 56.6 153 30.7
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 3.7e-06 56.6 70 40.0
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 3.7e-06 56.6 70 40.0
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 4.8e-06 56.2 75 42.7
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 4.8e-06 56.2 70 42.9
A02p04000 Brassica napus HOM05D001822 ORTHO05D001744 6.3e-06 55.8 33 72.7
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 6.3e-06 55.8 156 30.1
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 6.3e-06 55.8 158 31.0
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 6.3e-06 55.8 106 34.0
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 6.3e-06 55.8 106 34.0
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 6.3e-06 55.8 70 42.9
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 8.3e-06 55.5 73 41.1
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 8.3e-06 55.5 123 31.7
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 8.3e-06 55.5 69 40.6
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 8.3e-06 55.5 94 38.3
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 8.3e-06 55.5 70 42.9
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 8.3e-06 55.5 154 30.5


User provided reference genes

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