Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 8.5e-93 343.6 165 100.0
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.9e-56 221.5 165 72.1
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-49 200.3 165 66.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 6.4e-40 167.9 165 57.6
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 7.8e-38 161.0 170 55.3
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.1e-30 136.3 166 49.4
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.3e-28 128.6 116 51.7
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 5.6e-28 128.3 167 46.1
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.6e-27 125.6 81 69.1
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 8.1e-27 124.4 167 45.5
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 8.1e-27 124.4 163 48.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.4e-26 123.6 164 48.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.4e-26 122.9 79 70.9
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.1e-26 122.5 163 44.8
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.3e-26 121.7 163 47.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 6.9e-26 121.3 166 46.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.9e-26 121.3 165 47.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-25 120.2 167 46.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.5e-25 120.2 165 46.7
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.5e-25 120.2 160 44.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.6e-25 119.4 116 56.9
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.8e-25 118.2 114 50.9
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.3e-24 117.1 80 67.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.9e-24 115.9 84 69.0
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.9e-24 115.9 82 65.9
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.9e-24 115.9 166 46.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.1e-23 114.0 166 45.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-23 114.0 78 70.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.4e-23 113.6 170 42.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.2e-23 112.5 84 64.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.2e-23 112.5 78 69.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.2e-23 112.5 79 68.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.4e-23 111.7 163 42.3
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.4e-23 111.7 170 44.1
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.2e-22 110.5 79 67.1
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.6e-22 110.2 164 42.7
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.7e-22 109.4 164 43.3
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.7e-22 109.4 87 62.1
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 3.5e-22 109.0 82 63.4
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.6e-22 108.6 161 44.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.6e-22 108.6 80 56.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 6.0e-22 108.2 82 63.4
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 6.0e-22 108.2 169 40.2
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 7.9e-22 107.8 80 62.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 7.9e-22 107.8 80 62.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 7.9e-22 107.8 82 63.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.3e-21 107.1 165 42.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 3.9e-21 105.5 85 62.4
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.9e-21 105.5 82 61.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 5.1e-21 105.1 82 59.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 8.7e-21 104.4 82 61.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.1e-20 104.0 82 61.0
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.9e-20 103.2 161 41.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-20 103.2 85 61.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.3e-20 102.4 168 40.5
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.3e-20 102.1 83 62.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 7.4e-20 101.3 84 59.5
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 9.6e-20 100.9 81 61.7
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 9.6e-20 100.9 80 58.8
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.5 160 40.0
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.5 160 40.0
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.5 160 40.0
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.5 160 40.0
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.6e-19 100.1 164 39.6
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.1e-19 99.8 80 58.8
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-19 99.4 169 40.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.8e-19 99.4 163 41.1
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 6.2e-19 98.2 87 57.5
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 6.2e-19 98.2 82 56.1
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.2e-19 98.2 80 56.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.2e-19 98.2 93 54.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-18 97.4 82 56.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-18 97.1 80 57.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-18 96.7 163 39.9
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.4e-18 96.3 80 60.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.1e-18 95.9 169 39.6
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 3.1e-18 95.9 167 40.7
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.0e-18 95.5 79 55.7
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 4.0e-18 95.5 162 38.9
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 5.3e-18 95.1 164 42.1
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 5.3e-18 95.1 168 39.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 9.0e-18 94.4 175 42.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-17 94.0 84 53.6
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.2e-17 94.0 83 59.0
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.5e-17 93.6 167 40.7
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.5e-17 93.6 85 55.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 3.4e-17 92.4 80 55.0
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 5.8e-17 91.7 81 60.5
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 9.9e-17 90.9 82 52.4
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.9e-17 90.9 170 38.2
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 9.9e-17 90.9 171 40.9
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.9e-17 90.9 81 53.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.3e-16 90.5 161 36.0
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-16 90.5 166 36.7
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-16 90.5 166 36.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.7e-16 90.1 82 54.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.7e-16 90.1 81 59.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.7e-16 90.1 83 53.0
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.9e-16 89.4 79 53.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.9e-16 89.4 166 36.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.8e-16 89.0 81 54.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 3.8e-16 89.0 79 55.7
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 4.9e-16 88.6 167 35.9
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 4.9e-16 88.6 82 53.7
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.9e-16 88.6 167 41.3
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 8.4e-16 87.8 87 44.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.9e-15 86.7 82 51.2
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-15 86.7 78 51.3
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.2e-15 85.5 84 48.8
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 4.2e-15 85.5 86 52.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 4.2e-15 85.5 82 47.6
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 5.5e-15 85.1 81 51.9
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 5.5e-15 85.1 79 54.4
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 7.1e-15 84.7 166 38.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.1e-15 84.7 82 53.7
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 9.3e-15 84.3 164 39.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 9.3e-15 84.3 80 50.0
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.6e-14 83.6 80 51.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.6e-14 83.6 84 53.6
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.1e-14 83.2 162 38.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.1e-14 83.2 80 51.2
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.1e-14 83.2 85 51.8
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.1e-14 83.2 85 51.8
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.5e-14 82.4 82 53.7
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.6e-14 82.0 82 47.6
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.6e-14 82.0 167 38.3
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.0e-14 81.6 165 36.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 6.0e-14 81.6 169 37.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.0e-14 81.6 83 49.4
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 6.0e-14 81.6 78 51.3
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-13 80.9 82 46.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.3e-13 80.5 165 35.8
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.3e-13 80.5 84 48.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.3e-13 80.5 122 39.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.8e-13 80.1 82 47.6
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 47.6
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 47.6
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 47.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 45.1
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 46.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-13 79.7 78 53.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.3e-13 79.7 82 47.6
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 3.0e-13 79.3 83 49.4
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-13 79.0 82 45.1
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-13 79.0 83 48.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 3.9e-13 79.0 83 48.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 3.9e-13 79.0 83 48.2
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-13 79.0 122 40.2
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 5.1e-13 78.6 82 45.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 5.1e-13 78.6 82 46.3
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 5.1e-13 78.6 82 46.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.1e-13 78.6 83 49.4
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 6.7e-13 78.2 82 45.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.7e-13 78.2 82 43.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 6.7e-13 78.2 82 45.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.7e-13 78.2 82 43.9
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 6.7e-13 78.2 83 49.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.7e-13 78.2 77 49.4
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.7e-13 77.8 82 46.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.1e-12 77.4 83 45.8
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-12 77.4 93 41.9
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-12 77.0 81 50.6
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.9e-12 76.6 82 43.9
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.9e-12 76.6 41 78.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.9e-12 76.6 164 32.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-12 76.3 80 47.5
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.3e-12 75.5 79 48.1
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.3e-12 75.5 80 50.0
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.3e-12 75.5 165 33.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 5.6e-12 75.1 82 45.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.6e-12 75.1 84 48.8
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.6e-11 73.6 77 50.6
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 4.8e-11 72.0 80 48.8
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.4e-10 69.7 72 43.1
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.6e-09 66.2 49 61.2
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.5e-09 65.5 79 40.5
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.8e-09 65.1 77 42.9
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.6e-09 64.7 82 43.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.6e-09 64.7 64 45.3
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.0e-08 64.3 79 43.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.3e-08 63.9 82 47.6
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.3e-08 63.9 77 44.2
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.7e-08 63.5 78 41.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 3.8e-08 62.4 82 47.6
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-07 60.8 82 45.1
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 7.1e-07 58.2 78 39.7
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 4.6e-06 55.5 78 39.7


User provided reference genes

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