Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028126 Chenopodium quinoa HOM05D004444 ORTHO05D005246 2.4e-176 622.1 321 100.0
AUR62005937 Chenopodium quinoa HOM05D004444 ORTHO05D005246 4.4e-170 601.3 321 96.9
EL10Ac3g05121 Beta vulgaris HOM05D004444 ORTHO05D005246 4.1e-152 541.6 321 86.9
Ah.04g157380 Amaranthus hybridus HOM05D004444 ORTHO05D005246 1.1e-144 516.9 321 84.7
Sc19g0000340 Simmondsia chinensis HOM05D004444 ORTHO05D005246 1.1e-141 506.9 321 82.9
Hund21081 Selenicereus undatus HOM05D004444 ORTHO05D005246 3.4e-138 495.4 325 81.5
Hund09760 Selenicereus undatus HOM05D004444 ORTHO05D005246 8.4e-137 490.7 322 80.7
GSVIVG01002027001 Vitis vinifera HOM05D004444 ORTHO05D005246 2.6e-130 469.2 322 78.6
Rhsim02G0256600 Rhododendron simsii HOM05D004444 ORTHO05D005246 2.8e-124 449.1 319 76.5
Dinv12635 Davidia involucrata HOM05D004444 ORTHO05D005246 6.9e-123 444.5 318 75.5
vmacro18720 Vaccinium macrocarpon HOM05D004444 ORTHO05D005246 6.9e-123 444.5 319 75.9
Potri.010G255600 Populus trichocarpa HOM05D004444 ORTHO05D005246 9.0e-123 444.1 322 73.9
CSS0046171 Camellia sinensis var. sinensis HOM05D004444 ORTHO05D005246 1.2e-122 443.7 318 75.8
TAR374G0400 Trochodendron aralioides HOM05D004444 ORTHO05D005246 1.2e-122 443.7 322 75.5
FvH4_4g37380 Fragaria vesca HOM05D004444 ORTHO05D005246 4.5e-122 441.8 323 75.5
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.5e-122 441.8 323 75.5
FAN07G0307 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.3e-121 440.3 323 75.2
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 4.9e-121 438.3 322 72.4
Haze_17392 Corylus avellana HOM05D004444 ORTHO05D005246 8.4e-121 437.6 322 73.6
Nn3g18734 Nelumbo nucifera HOM05D004444 ORTHO05D005246 8.4e-121 437.6 319 75.9
Sabra10G0199000 Salix brachista HOM05D004444 ORTHO05D005246 1.1e-120 437.2 322 73.0
Cfa018662 Carpinus fangiana HOM05D004444 ORTHO05D005246 2.5e-120 436.0 317 74.4
RcHm_v2.0_Chr4g0447291 Rosa chinensis HOM05D004444 ORTHO05D005246 9.3e-120 434.1 323 74.3
CiPaw.16G000300 Carya illinoinensis HOM05D004444 ORTHO05D005246 1.2e-119 433.7 322 73.9
Aqoxy5G04401 Aquilegia oxysepala HOM05D004444 ORTHO05D005246 3.5e-119 432.2 323 74.0
MD16G1005800 Malus domestica HOM05D004444 ORTHO05D005246 7.9e-119 431.0 316 75.0
Duzib248G0301 Durio zibethinus HOM05D004444 ORTHO05D005246 3.9e-118 428.7 322 71.7
DCAR_009036 Daucus carota HOM05D004444 ORTHO05D005246 6.7e-118 427.9 317 73.8
Cpa.g.sc248.6 Carica papaya HOM05D004444 ORTHO05D005246 8.7e-118 427.6 322 72.7
Prupe.1G584800 Prunus persica HOM05D004444 ORTHO05D005246 1.1e-117 427.2 323 73.4
Thecc.02G151100 Theobroma cacao HOM05D004444 ORTHO05D005246 1.9e-117 426.4 322 71.7
TWI77G0180 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 1.9e-117 426.4 322 71.1
MD13G1000100 Malus domestica HOM05D004444 ORTHO05D005246 3.3e-117 425.6 316 74.1
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 5.6e-117 424.9 322 72.0
ClCG11G012850 Citrullus lanatus HOM05D004444 ORTHO05D005246 9.6e-117 424.1 324 71.3
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 9.6e-117 424.1 318 73.0
QL01p000088 Quercus lobata HOM05D004444 ORTHO05D005246 9.6e-117 424.1 318 73.9
TWI74G0409 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 1.6e-116 423.3 322 71.1
Potri.008G002100 Populus trichocarpa HOM05D004444 ORTHO05D005246 2.8e-116 422.5 322 72.4
Glyma.19G000300 Glycine max HOM05D004444 ORTHO05D005246 3.7e-116 422.2 316 73.7
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 4.8e-116 421.8 317 71.3
CsaV3_5G029250 Cucumis sativus L. HOM05D004444 ORTHO05D005246 4.8e-116 421.8 324 71.0
MBI04_g37105_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 6.2e-116 421.4 318 74.8
Atru.chr11.7 Acer truncatum HOM05D004444 ORTHO05D005246 8.2e-116 421.0 315 72.7
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 8.2e-116 421.0 317 72.2
Duzib052G0576 Durio zibethinus HOM05D004444 ORTHO05D005246 1.4e-115 420.2 322 71.1
Glyma.05G000200 Glycine max HOM05D004444 ORTHO05D005246 1.4e-115 420.2 316 74.1
HanXRQChr01g0023401 Helianthus annuus HOM05D004444 ORTHO05D005246 1.4e-115 420.2 321 71.0
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 4.0e-115 418.7 314 72.3
Nitab4.5_0003481g0120 Nicotiana tabacum HOM05D004444 ORTHO05D005246 4.0e-115 418.7 318 72.0
Nitab4.5_0005808g0020 Nicotiana tabacum HOM05D004444 ORTHO05D005246 4.0e-115 418.7 318 71.7
Duzib132G0849 Durio zibethinus HOM05D004444 ORTHO05D005246 5.3e-115 418.3 322 71.1
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 6.9e-115 417.9 314 73.6
Sed0005704 Sechium edule HOM05D004444 ORTHO05D005246 9.0e-115 417.5 322 70.8
Sed0021880 Sechium edule HOM05D004444 ORTHO05D005246 9.0e-115 417.5 322 70.2
PGR044G0398 Punica granatum HOM05D004444 ORTHO05D005246 3.4e-114 415.6 322 70.8
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 5.8e-114 414.8 314 72.6
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 1.0e-113 414.1 314 72.3
VMungo0464G0300 Vigna mungo HOM05D004444 ORTHO05D005246 1.3e-113 413.7 315 73.7
CAN.G1045.17 Capsicum annuum HOM05D004444 ORTHO05D005246 1.7e-113 413.3 318 71.1
Lj2g0009416 Lotus japonicus HOM05D004444 ORTHO05D005246 2.9e-113 412.5 316 71.8
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 2.9e-113 412.5 322 71.4
PSO063G7312 Papaver somniferum HOM05D004444 ORTHO05D005246 4.9e-113 411.8 326 72.4
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.5e-113 411.4 307 74.6
Phvul.004G000500 Phaseolus vulgaris HOM05D004444 ORTHO05D005246 8.4e-113 411.0 315 73.3
Gohir.A04G110200 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.4e-112 410.2 322 70.8
Gohir.A12G011300 Gossypium hirsutum HOM05D004444 ORTHO05D005246 3.2e-112 409.1 322 69.3
Gorai.012G137000 Gossypium raimondii HOM05D004444 ORTHO05D005246 3.2e-112 409.1 324 70.4
Solyc01g096500.3 Solanum lycopersicum HOM05D004444 ORTHO05D005246 5.5e-112 408.3 318 70.8
Sopen01g040230 Solanum pennellii HOM05D004444 ORTHO05D005246 5.5e-112 408.3 318 70.8
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 9.3e-112 407.5 315 71.1
arahy.Tifrunner.gnm1.ann1.U9T50E Arachis hypogaea HOM05D004444 ORTHO05D005246 1.2e-111 407.1 315 72.1
Gohir.D12G011700 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.2e-111 407.1 322 69.3
Gohir.D12G011780 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.2e-111 407.1 322 69.3
ECA248G3474 Erigeron canadensis HOM05D004444 ORTHO05D005246 1.6e-111 406.8 321 70.7
Gorai.008G011700 Gossypium raimondii HOM05D004444 ORTHO05D005246 1.6e-111 406.8 322 69.3
Eucgr.J00322 Eucalyptus grandis HOM05D004444 ORTHO05D005246 6.0e-111 404.8 322 69.3
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 1.8e-110 403.3 315 70.2
arahy.Tifrunner.gnm1.ann1.8PY7V8 Arachis hypogaea HOM05D004444 ORTHO05D005246 5.1e-110 401.7 315 71.1
Gorai.013G066500 Gossypium raimondii HOM05D004444 ORTHO05D005246 8.7e-110 401.0 314 69.7
Gohir.D13G058925 Gossypium hirsutum HOM05D004444 ORTHO05D005246 4.3e-109 398.7 314 69.7
THA.LOC104818390 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 7.4e-109 397.9 325 67.4
DCAR_020440 Daucus carota HOM05D004444 ORTHO05D005246 2.2e-108 396.4 316 69.3
PSO782G3237 Papaver somniferum HOM05D004444 ORTHO05D005246 4.8e-108 395.2 326 69.3
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 2.6e-106 389.4 324 66.7
HanXRQChr11g0343011 Helianthus annuus HOM05D004444 ORTHO05D005246 6.5e-105 384.8 321 68.5
Oeu064128.1 Olea europaea HOM05D004444 ORTHO05D005246 2.5e-104 382.9 316 69.0
Aa31LG11G2870 Aethionema arabicum HOM05D004444 ORTHO05D005246 1.8e-102 376.7 324 65.7
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 4.3e-101 372.1 321 63.9
Thhalv10003687m.g Eutrema salsugineum HOM05D004444 ORTHO05D005246 4.3e-101 372.1 324 63.3
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 9.7e-101 370.9 321 63.9
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 9.7e-101 370.9 322 63.7
Sp2g23710 Schrenkiella parvula HOM05D004444 ORTHO05D005246 2.8e-100 369.4 324 62.3
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 6.3e-100 368.2 321 62.9
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 6.3e-100 368.2 328 64.3
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 2.4e-99 366.3 315 64.4
SGA_v2.0_scaffold232G43497 Striga asiatica HOM05D004444 ORTHO05D005246 1.2e-98 364.0 322 66.5
BcaNung03734 Brassica carinata HOM05D004444 ORTHO05D005246 2.6e-98 362.8 322 62.1
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 3.4e-98 362.5 322 62.4
BolC2t12137H Brassica oleracea HOM05D004444 ORTHO05D005246 3.4e-98 362.5 322 62.4
TAR375G0344 Trochodendron aralioides HOM05D004444 ORTHO05D005246 2.2e-97 359.8 260 77.3
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 2.9e-97 359.4 322 62.1
BraA02t09044Z Brassica rapa HOM05D004444 ORTHO05D005246 2.9e-97 359.4 322 62.1
Lsat_1_v5_gn_1_74220 Lactuca sativa HOM05D004444 ORTHO05D005246 1.1e-96 357.5 331 63.1
Lju50C3G3 Lonicera japonica HOM05D004444 ORTHO05D005246 1.1e-96 357.5 265 77.7
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 1.4e-96 357.1 315 68.3
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 4.2e-96 355.5 301 68.4
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 1.6e-95 353.6 323 61.3
BolC7t44936H Brassica oleracea HOM05D004444 ORTHO05D005246 1.6e-95 353.6 323 61.3
ATR0810G148 Amborella trichopoda HOM05D004444 ORTHO05D005246 3.6e-95 352.4 331 63.4
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 4.7e-95 352.1 326 60.7
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 7.9e-95 351.3 323 61.0
BraA06t26373Z Brassica rapa HOM05D004444 ORTHO05D005246 7.9e-95 351.3 323 61.0
SGA_v2.0_scaffold43G16290 Striga asiatica HOM05D004444 ORTHO05D005246 3.0e-94 349.4 323 63.2
Zm00001eb427640 Zea mays HOM05D004444 ORTHO05D005246 7.7e-90 334.7 323 63.5
SHI21195 Sapria himalayana HOM05D004444 ORTHO05D005246 1.3e-89 334.0 316 61.4
Os04g0541500 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 3.8e-89 332.4 328 62.2
CDE09G0893 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 5.5e-88 328.6 294 65.6
Os10g0516800 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 4.4e-85 318.9 326 58.6
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 8.2e-84 314.7 313 59.7
Zm00001eb043540 Zea mays HOM05D004444 ORTHO05D005246 1.5e-80 303.9 323 57.9
arahy.Tifrunner.gnm1.ann1.VXL9CA Arachis hypogaea HOM05D004444 ORTHO05D005246 4.4e-77 292.4 232 70.3
HPP92_022710 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.8e-70 270.4 314 53.2
HPP92_022588 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.2e-61 241.1 235 62.1
Actinidia33639 Actinidia chinensis HOM05D004444 ORTHO05D005246 2.9e-57 226.5 145 78.6
Gohir.D04G150400 Gossypium hirsutum HOM05D004444 ORTHO05D005246 6.8e-54 215.3 174 73.6
HPP92_008908 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.2e-45 188.0 202 60.4
Zm00001eb197100 Zea mays HOM05D004444 ORTHO05D005246 4.9e-44 182.6 227 56.4
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 5.8e-37 159.1 293 36.2
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 2.9e-36 156.8 312 36.2
SMO239G0136 Selaginella moellendorffii HOM05D004444 ORTHO05D005246 1.0e-33 148.3 312 36.9
CBR_g39941 Chara braunii HOM05D004444 ORTHO05D005246 1.3e-33 147.9 131 51.9
CDE11G1250 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 5.1e-33 146.0 126 65.1
Os08g0152700 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 5.1e-33 146.0 135 54.8
CDE11G0399 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 1.5e-32 144.4 105 75.2
Zm00001eb172780 Zea mays HOM05D004444 ORTHO05D005246 2.1e-31 140.6 146 47.9
unitig_61.g26367 Utricularia gibba HOM05D004444 ORTHO05D005246 1.1e-27 128.3 100 63.0
unitig_61.g26366 Utricularia gibba HOM05D004444 ORTHO05D005246 1.7e-25 120.9 120 55.8
QL12p027399 Quercus lobata HOM05D004444 ORTHO05D005246 1.7e-20 104.4 67 80.6
Oeu006789.1 Olea europaea HOM05D004444 ORTHO05D005246 2.5e-16 90.5 57 70.2
Zm00001eb242540 Zea mays HOM05D004444 ORTHO05D005246 7.3e-16 89.0 86 62.8
Sc13g0010690 Simmondsia chinensis HOM05D004444 ORTHO05D005246 1.2e-13 81.6 117 53.0
HPP92_028194 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.9e-08 64.3 51 54.9
CDE05G1825 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 5.3e-06 56.2 101 34.7


User provided reference genes

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