Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.6e-81 305.1 179 100.0
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.1e-76 289.3 179 91.6
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 4.3e-58 228.4 176 69.3
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.3e-51 206.8 166 66.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.3e-49 200.3 173 60.7
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.6e-49 199.9 171 62.0
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.4e-48 196.1 229 52.4
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 4.1e-48 195.3 168 61.3
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.6e-47 192.6 166 59.6
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.3e-46 190.3 171 67.8
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.1e-45 187.2 177 57.1
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.2e-45 185.7 169 58.6
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 3.2e-45 185.7 176 55.1
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.2e-45 185.3 166 60.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 7.2e-45 184.5 177 54.8
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 9.4e-45 184.1 166 57.2
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.2e-44 183.7 168 58.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.6e-44 183.3 176 54.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.1e-44 183.0 167 59.3
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 4.6e-44 181.8 175 55.4
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 4.6e-44 181.8 166 57.8
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 7.9e-44 181.0 176 54.5
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.0e-43 180.6 176 56.2
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.0e-43 180.6 177 54.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.8e-43 179.9 177 54.2
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.3e-43 179.5 166 54.8
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 2.3e-43 179.5 174 58.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.9e-43 178.7 174 62.1
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.9e-43 178.7 166 56.0
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 5.1e-43 178.3 177 54.8
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 3.3e-42 175.6 166 54.8
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 3.3e-42 175.6 177 54.8
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 4.3e-42 175.3 167 56.3
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 5.7e-42 174.9 174 58.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.4e-42 174.5 177 52.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.4e-42 174.5 177 52.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 7.4e-42 174.5 174 59.2
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 7.4e-42 174.5 166 64.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 9.7e-42 174.1 169 53.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.3e-41 173.7 176 50.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.3e-41 173.7 167 55.1
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.2e-41 172.9 176 52.8
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.8e-41 172.6 169 54.4
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 3.7e-41 172.2 177 52.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 4.8e-41 171.8 167 54.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 4.8e-41 171.8 167 54.5
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 6.3e-41 171.4 164 56.7
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 8.2e-41 171.0 166 54.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.1e-40 170.6 166 51.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.3e-40 168.3 168 52.4
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 6.9e-40 167.9 181 53.0
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 9.1e-40 167.5 177 52.0
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.2e-39 167.2 169 53.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.2e-39 167.2 182 48.9
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.0e-39 166.4 182 48.9
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 2.0e-39 166.4 167 59.9
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.3e-38 163.7 167 51.5
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.3e-38 163.7 177 51.4
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.1e-37 160.6 166 50.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.9e-37 159.8 169 50.9
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.2e-37 159.1 166 49.4
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 3.2e-37 159.1 169 50.3
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 7.2e-37 157.9 176 48.3
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 9.4e-37 157.5 145 57.9
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.2e-36 157.1 166 52.4
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.7e-36 156.0 215 43.3
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 3.6e-36 155.6 167 50.3
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 6.1e-36 154.8 149 57.0
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.0e-35 154.1 166 49.4
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.4e-35 153.7 151 55.6
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.8e-35 153.3 177 46.9
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.3e-35 152.9 176 46.0
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.3e-35 152.9 168 48.8
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.0e-35 152.5 169 49.1
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 3.9e-35 152.1 176 46.6
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 6.7e-35 151.4 176 48.3
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 8.8e-35 151.0 215 40.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.3e-34 149.1 166 50.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.4e-34 148.7 168 48.8
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 5.7e-34 148.3 176 46.0
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.3e-33 147.1 166 48.8
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.2e-33 146.4 176 46.0
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 3.7e-33 145.6 176 44.9
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.4e-32 142.9 176 45.5
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 3.1e-32 142.5 176 44.9
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 4.1e-32 142.1 176 44.3
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 7.0e-32 141.4 176 43.8
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 7.0e-32 141.4 175 49.7
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.2e-31 140.6 176 44.9
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.6e-31 139.4 169 46.7
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.0e-30 137.5 174 52.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.3e-30 137.1 144 50.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.7e-30 136.7 169 46.2
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 7.2e-29 131.3 140 54.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.7e-28 128.6 173 43.4
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.3e-27 126.3 163 46.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.9e-27 125.6 96 68.8
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.6e-26 122.9 134 51.5
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.7e-25 120.2 173 40.5
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.4e-24 117.1 133 49.6
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.8e-24 116.7 88 67.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 4.1e-24 115.5 137 43.1
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 9.1e-24 114.4 176 36.9
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.7e-22 110.2 88 65.9
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 8.5e-22 107.8 144 43.1
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.5e-21 107.1 102 53.9
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.2e-21 105.5 97 58.8
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.2e-20 104.0 101 54.5
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.6e-20 102.4 110 48.2
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.7e-20 102.1 169 35.5
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 5.2e-19 98.6 125 44.8
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 6.8e-19 98.2 109 46.8
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 9.1e-16 87.8 62 69.4
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 3.5e-15 85.9 66 63.6
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 5.9e-15 85.1 96 46.9
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 3.8e-14 82.4 142 35.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.9e-13 80.1 168 31.5
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 7.2e-13 78.2 162 27.8
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.2e-09 66.6 63 52.4
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 3.7e-09 65.9 59 57.6
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 6.3e-09 65.1 55 52.7
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.1e-08 62.4 88 42.0


User provided reference genes

Program Settings