Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.2e-161 571.2 278 100.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-65 253.4 205 62.4
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-60 236.9 195 62.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-59 232.3 194 59.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-58 230.3 193 60.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-56 222.6 207 58.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.8e-56 222.2 192 60.4
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-55 218.4 195 58.5
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.0e-55 218.4 190 60.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 9.1e-55 218.0 192 58.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-53 214.2 198 56.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.2e-53 213.4 193 56.0
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-53 213.0 192 57.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 6.5e-53 211.8 192 57.3
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.5e-52 209.9 193 58.5
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.0e-50 204.5 204 52.9
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-48 197.6 198 53.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.9e-45 186.4 192 50.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.8e-42 177.2 203 51.2
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-42 176.8 127 70.9
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-41 174.1 200 47.0
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.5e-41 174.1 200 47.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.6e-41 173.3 196 49.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 7.5e-41 171.8 196 49.5
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 7.5e-41 171.8 200 47.0
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 9.7e-41 171.4 198 46.5
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.8e-40 169.9 204 45.6
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 4.8e-40 169.1 198 47.0
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 4.8e-40 169.1 196 49.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.3e-40 168.7 198 46.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.3e-40 168.7 198 46.5
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 6.3e-40 168.7 200 45.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-39 167.9 197 49.2
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.4e-39 166.8 197 49.2
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.1e-39 166.4 196 47.4
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.1e-39 166.4 198 44.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.1e-39 166.0 195 43.6
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.1e-39 166.0 198 45.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 4.1e-39 166.0 196 48.0
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 7.0e-39 165.2 205 44.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.1e-39 164.9 203 45.3
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.6e-38 164.1 198 43.4
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.6e-38 164.1 196 47.4
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.6e-38 164.1 198 46.0
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.0e-38 163.7 198 46.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.7e-38 163.3 198 44.4
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.5e-38 162.5 198 45.5
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 5.9e-38 162.2 198 43.4
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.9e-38 162.2 196 47.4
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.9e-38 162.2 196 47.4
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.9e-38 162.2 198 43.4
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 7.7e-38 161.8 198 43.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 7.7e-38 161.8 193 48.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 7.7e-38 161.8 197 47.2
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.0e-37 161.4 196 46.9
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-37 161.0 198 43.4
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.3e-37 161.0 203 45.3
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.7e-37 160.6 198 43.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.2e-37 160.2 198 44.4
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.9e-37 159.8 198 46.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 3.8e-37 159.5 198 46.5
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.8e-37 159.5 196 46.4
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.8e-37 159.5 196 46.4
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 5.0e-37 159.1 199 45.2
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 6.5e-37 158.7 198 43.4
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 6.5e-37 158.7 197 44.7
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 8.5e-37 158.3 198 47.0
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-36 157.9 198 43.9
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.5e-36 157.5 191 47.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.9e-36 157.1 199 42.2
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.5e-36 156.8 202 42.6
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.5e-36 156.8 197 45.7
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 7.2e-36 155.2 201 41.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 9.4e-36 154.8 198 44.9
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 9.4e-36 154.8 199 45.7
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.2e-35 154.5 197 42.1
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.2e-35 154.5 194 46.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-35 154.1 203 45.8
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.6e-35 154.1 199 43.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 2.1e-35 153.7 198 43.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.1e-35 153.7 201 41.3
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.7e-35 153.3 198 44.4
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.6e-35 152.9 199 44.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-35 152.9 199 42.7
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 6.1e-35 152.1 199 43.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 6.1e-35 152.1 200 40.5
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 8.0e-35 151.8 199 44.2
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.0e-34 151.4 182 48.9
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-34 151.0 187 44.4
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.8e-34 150.6 197 39.6
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-34 150.2 141 54.6
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.0e-34 149.8 202 41.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.2e-33 147.9 199 44.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.2e-33 147.9 197 39.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.5e-33 147.5 197 39.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 5.7e-33 145.6 195 41.5
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 9.8e-33 144.8 204 43.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-32 144.4 200 40.0
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.8e-32 143.3 194 43.3
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.8e-32 143.3 200 39.0
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.7e-32 142.9 199 40.2
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.8e-32 142.5 148 53.4
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 4.8e-32 142.5 197 41.1
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 6.3e-32 142.1 201 39.3
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.3e-32 141.7 203 39.4
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.5e-30 136.3 197 41.1
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 3.5e-30 136.3 189 41.8
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.5e-30 136.3 139 51.1
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.5e-30 136.0 195 37.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 4.5e-30 136.0 251 37.8
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 5.9e-30 135.6 199 39.7
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.3e-29 133.7 205 37.6
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.3e-29 133.7 194 39.7
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 6.6e-29 132.1 191 41.4
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 6.6e-29 132.1 203 36.5
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.2e-27 127.9 192 40.6
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-27 127.9 177 44.1
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.1e-27 125.6 182 40.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-26 124.0 121 53.7
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 8.9e-26 121.7 173 41.6
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 8.9e-26 121.7 192 37.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.2e-25 121.3 169 40.8
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 2.6e-25 120.2 182 43.4
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.7e-25 119.0 140 42.9
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.3e-24 117.9 206 36.4
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.2e-24 117.1 184 39.1
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 4.1e-23 112.8 203 35.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.9e-22 109.0 179 36.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 3.9e-21 106.3 212 34.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 3.3e-20 103.2 208 31.7
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 5.6e-20 102.4 214 30.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 7.3e-20 102.1 174 42.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 2.3e-18 97.1 138 37.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.4e-15 87.8 146 38.4
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.0e-13 81.6 107 43.0
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 9.5e-12 75.1 153 34.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.8e-10 68.9 69 50.7
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.6e-09 67.0 69 49.3
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.2e-07 60.1 41 68.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.0e-06 55.8 61 49.2


User provided reference genes

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