Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 2.1e-76 288.9 142 100.0
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.2e-71 273.1 143 95.1
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 9.3e-56 220.3 140 77.9
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 2.2e-49 199.1 136 72.1
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 3.3e-45 185.3 119 73.1
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.7e-44 183.0 120 70.0
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.7e-44 183.0 120 70.0
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 2.8e-44 182.2 116 71.6
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 6.3e-44 181.0 114 73.7
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 1.1e-43 180.3 120 70.8
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 3.1e-43 178.7 120 67.5
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 4.1e-43 178.3 121 67.8
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 4.1e-43 178.3 135 62.2
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.1e-43 178.3 117 68.4
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 6.9e-43 177.6 119 69.7
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 6.9e-43 177.6 119 69.7
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.2e-42 176.8 117 67.5
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 2.0e-42 176.0 130 63.8
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.6e-42 175.6 134 60.4
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 5.9e-42 174.5 118 66.1
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.0e-41 173.7 118 65.3
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 1.3e-41 173.3 125 63.2
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 1.7e-41 172.9 121 69.4
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.7e-41 172.9 121 69.4
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 2.2e-41 172.6 135 61.5
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 2.9e-41 172.2 119 67.2
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 2.9e-41 172.2 135 60.0
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 2.9e-41 172.2 121 69.4
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 3.8e-41 171.8 119 66.4
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 3.8e-41 171.8 117 70.9
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 6.5e-41 171.0 117 66.7
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 8.5e-41 170.6 119 63.9
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 8.5e-41 170.6 128 62.5
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 1.4e-40 169.9 119 66.4
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 1.9e-40 169.5 125 65.6
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 3.2e-40 168.7 115 70.4
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 3.2e-40 168.7 118 65.3
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 4.2e-40 168.3 123 63.4
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 5.5e-40 167.9 120 65.0
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 7.2e-40 167.5 120 66.7
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 9.4e-40 167.2 123 64.2
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 9.4e-40 167.2 115 67.8
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 9.4e-40 167.2 136 59.6
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 9.4e-40 167.2 126 59.5
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.2e-39 166.8 121 65.3
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 1.2e-39 166.8 115 68.7
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 1.6e-39 166.4 115 66.1
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 2.1e-39 166.0 117 68.4
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 3.6e-39 165.2 116 66.4
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 3.6e-39 165.2 122 62.3
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 3.6e-39 165.2 124 60.5
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 3.6e-39 165.2 124 60.5
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 4.7e-39 164.9 119 63.9
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 6.1e-39 164.5 113 68.1
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 7.9e-39 164.1 116 63.8
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 7.9e-39 164.1 116 63.8
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 1.0e-38 163.7 121 64.5
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 1.0e-38 163.7 129 60.5
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 1.0e-38 163.7 129 60.5
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 1.0e-38 163.7 127 60.6
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.0e-38 163.7 156 54.5
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.0e-38 163.7 115 68.7
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.4e-38 163.3 126 61.9
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.4e-38 163.3 126 61.9
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.4e-38 163.3 122 63.1
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.4e-38 163.3 119 63.9
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.3e-38 162.5 115 67.8
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 2.3e-38 162.5 116 62.9
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 3.0e-38 162.2 126 61.1
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 3.0e-38 162.2 115 68.7
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.1e-37 160.2 140 55.0
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.1e-37 160.2 114 64.9
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 2.0e-37 159.5 112 66.1
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 2.6e-37 159.1 126 60.3
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 2.6e-37 159.1 116 62.1
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 2.6e-37 159.1 113 63.7
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 2.6e-37 159.1 138 58.7
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 4.4e-37 158.3 120 65.0
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 4.4e-37 158.3 113 62.8
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 5.7e-37 157.9 115 66.1
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 7.4e-37 157.5 170 48.2
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.3e-36 156.8 146 56.8
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 1.1e-35 153.7 109 63.3
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 1.1e-35 153.7 123 61.0
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 4.1e-35 151.8 118 61.9
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 1.6e-34 149.8 152 52.0
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 2.2e-33 146.0 121 58.7
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 1.9e-32 142.9 91 70.3
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 2.1e-31 139.4 90 72.2
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.2e-29 133.7 102 58.8
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 3.3e-29 132.1 110 55.5
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 1.7e-28 129.8 118 55.1
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 4.8e-28 128.3 122 48.4
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 4.8e-28 128.3 101 58.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 7.0e-27 124.4 134 51.5
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 2.0e-26 122.9 114 50.0
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 2.7e-26 122.5 120 54.2
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 2.2e-25 119.4 125 48.8
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 2.9e-25 119.0 121 52.9
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 2.9e-25 119.0 117 51.3
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 8.5e-25 117.5 99 56.6
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 1.5e-24 116.7 125 46.4
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.6e-23 113.2 78 67.9
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 3.0e-22 109.0 69 73.9
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 1.8e-19 99.8 76 56.6
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 2.4e-19 99.4 122 43.4
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 3.5e-18 95.5 71 63.4
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 2.9e-17 92.4 62 74.2
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 5.0e-17 91.7 54 77.8
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 2.3e-14 82.8 48 79.2
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.0e-14 82.0 55 67.3
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 9.2e-11 70.9 97 44.3
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 9.2e-11 70.9 54 48.1
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 1.0e-09 67.4 102 31.4
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 1.6e-07 60.1 49 44.9
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 2.1e-07 59.7 83 42.2


User provided reference genes

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