Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 8.4e-243 843.2 406 100.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.3e-215 751.5 375 94.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.5e-199 697.2 416 82.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 9.1e-189 663.7 411 80.3
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.8e-177 625.5 370 84.3
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.5e-172 608.6 407 74.4
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 3.6e-169 598.6 410 72.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 3.6e-169 598.6 354 80.2
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.1e-168 597.0 407 71.7
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.4e-168 596.7 404 72.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.1e-168 595.5 410 73.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.0e-167 592.8 421 69.4
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.0e-167 592.8 410 72.2
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-166 590.1 397 73.3
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.9e-166 589.0 355 80.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 6.4e-166 587.8 407 71.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.4e-165 586.6 414 70.8
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 2.4e-165 585.9 401 71.3
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 2.4e-165 585.9 401 71.3
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.4e-165 585.9 342 81.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.4e-165 585.9 424 68.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.2e-165 585.5 401 73.1
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.2e-165 585.5 400 73.0
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 4.1e-165 585.1 410 70.7
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 4.1e-165 585.1 409 70.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 9.2e-165 583.9 399 70.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 9.2e-165 583.9 409 70.4
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-164 583.2 402 71.9
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.7e-164 582.4 342 80.1
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.5e-164 582.0 342 80.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 3.5e-164 582.0 346 79.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.6e-164 581.6 406 72.2
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 4.6e-164 581.6 402 69.4
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 6.0e-164 581.3 395 71.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 7.8e-164 580.9 407 71.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.3e-163 580.1 410 70.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-163 579.7 332 82.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.3e-163 579.3 408 70.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.0e-163 578.9 399 72.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 3.9e-163 578.6 405 70.4
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 3.9e-163 578.6 405 68.4
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 5.0e-163 578.2 399 70.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.0e-163 578.2 400 70.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 6.6e-163 577.8 415 70.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 8.6e-163 577.4 399 72.4
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 8.6e-163 577.4 410 70.0
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.1e-162 577.0 400 70.0
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.5e-162 576.6 400 72.0
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.5e-162 576.6 407 70.0
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.9e-162 576.2 406 70.4
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.9e-162 576.2 406 69.7
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 405 70.1
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 399 70.7
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 4.3e-162 575.1 352 78.1
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 4.3e-162 575.1 400 70.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 4.3e-162 575.1 407 69.8
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.6e-162 574.7 397 70.8
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 7.3e-162 574.3 405 69.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 7.3e-162 574.3 362 76.0
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.2e-161 573.5 447 65.5
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.6e-161 573.2 424 69.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.2e-161 571.2 400 71.2
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.8e-160 569.7 330 79.7
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-160 567.8 401 71.1
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 6.8e-160 567.8 359 76.0
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.2e-159 567.0 411 68.6
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.0e-159 566.2 399 69.7
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.6e-159 565.8 407 69.3
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.6e-159 565.8 398 69.8
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 5.8e-159 564.7 351 76.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.5e-159 564.3 426 68.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 9.9e-159 563.9 400 70.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-158 562.8 412 67.5
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.4e-157 560.1 433 64.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 9.2e-157 557.4 407 66.8
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 9.2e-157 557.4 357 75.6
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 6.0e-156 554.7 364 75.5
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 7.8e-156 554.3 370 73.2
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-155 553.9 340 76.8
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 8.6e-155 550.8 345 75.1
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 8.6e-155 550.8 327 78.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 9.5e-154 547.4 409 67.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.2e-153 547.0 341 76.2
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.6e-153 546.6 345 74.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.1e-153 546.2 372 68.5
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.8e-153 545.8 356 72.8
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 3.6e-153 545.4 345 74.5
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 8.1e-153 544.3 340 74.7
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.4e-152 543.5 341 75.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-152 543.5 345 73.9
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.4e-152 543.5 410 67.8
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.8e-152 543.1 298 85.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.4e-152 542.7 350 74.0
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 4.0e-152 542.0 347 74.4
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 4.0e-152 542.0 346 74.0
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 4.0e-152 542.0 341 75.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.5e-151 540.0 345 74.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 5.8e-151 538.1 347 73.5
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.3e-150 537.0 344 73.8
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.9e-150 535.8 373 70.0
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.2e-148 530.4 333 75.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.5e-146 523.5 361 72.0
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.5e-146 523.5 381 66.1
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.1e-145 519.6 407 66.3
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.1e-145 519.6 407 66.3
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.6e-145 518.8 341 72.7
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 8.1e-145 517.7 340 71.8
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 6.9e-144 514.6 407 65.8
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 9.0e-144 514.2 400 66.0
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 9.0e-144 514.2 367 67.3
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.8e-142 508.8 329 72.6
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-140 503.1 325 73.8
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.6e-140 501.9 283 82.3
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 7.8e-140 501.1 354 68.9
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.7e-139 500.0 328 70.4
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.0e-139 499.2 341 70.7
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.9e-138 496.5 325 69.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.6e-137 493.4 332 74.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-137 493.0 298 76.2
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 5.3e-136 488.4 303 75.6
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 5.3e-136 488.4 303 75.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 9.9e-135 484.2 345 68.4
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-133 479.2 279 79.6
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 7.1e-133 478.0 326 68.4
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 2.1e-132 476.5 334 66.2
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.5e-127 460.3 438 57.5
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-122 443.0 330 65.8
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.9e-117 426.8 339 58.4
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 9.7e-114 414.5 340 62.4
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.2e-109 399.4 335 62.7
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 9.4e-109 397.9 333 58.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.6e-108 397.1 321 57.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 3.9e-107 392.5 263 72.6
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.4e-93 347.4 339 54.9
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 5.0e-86 322.4 188 80.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.2e-85 319.7 183 83.1
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 8.0e-84 315.1 212 74.1
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-83 312.4 361 50.7
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.8e-72 277.3 157 82.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 2.7e-71 273.5 275 53.8
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.8e-70 269.6 342 45.0
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-63 245.4 143 76.2
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.6e-58 230.3 296 46.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-55 221.5 235 52.3
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-53 211.8 232 51.7
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-47 194.9 295 41.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 9.5e-45 185.3 116 74.1
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-44 183.0 180 56.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-43 179.5 132 67.4
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-41 172.9 180 55.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-41 172.9 180 55.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-40 169.9 122 69.7
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 9.2e-32 142.1 234 38.9
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-30 137.9 159 49.1
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-30 137.9 159 49.1
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.6e-20 104.8 169 38.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 3.4e-18 97.1 73 61.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 3.4e-18 97.1 73 61.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 6.7e-14 82.8 51 76.5
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 1.2e-07 62.0 48 62.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-07 60.8 39 71.8
Ca_28728_v3 Cicer arietinum L. HOM05D004356 ORTHO05D148060 3.5e-07 60.5 229 27.9
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.3e-06 58.5 38 71.1
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 2.3e-06 57.8 56 51.8
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 2.3e-06 57.8 56 51.8


User provided reference genes

Program Settings