Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.6e-117 425.2 265 100.0
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 8.0e-109 397.5 265 96.2
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.4e-91 339.0 264 71.6
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.7e-82 310.1 263 76.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.8e-67 258.5 263 60.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.5e-67 258.1 264 68.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 4.9e-66 255.4 263 53.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.3e-66 254.6 265 54.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.9e-65 253.4 267 55.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.2e-65 252.7 259 55.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.6e-64 250.4 263 60.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.7e-64 249.6 263 58.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.7e-63 246.9 265 58.1
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 6.6e-63 245.0 263 51.7
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.6e-63 244.6 263 57.4
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.5e-62 243.8 263 58.9
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.9e-62 243.4 263 51.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 9.5e-62 241.1 263 57.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.2e-61 238.4 257 51.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.2e-61 238.4 263 56.3
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 6.2e-61 238.4 263 58.6
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-60 236.9 263 50.2
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.8e-60 236.9 263 51.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.8e-60 235.0 257 50.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-59 233.4 263 57.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.4e-59 232.6 256 51.6
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.8e-59 231.9 257 49.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.9e-59 231.1 263 60.1
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.9e-59 231.1 257 49.0
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.2e-58 229.9 263 55.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.4e-58 228.4 263 62.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.4e-58 228.4 263 51.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 6.4e-58 228.4 257 49.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.4e-57 227.3 272 54.4
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.4e-57 227.3 314 45.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.9e-57 226.9 257 49.4
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.9e-57 226.9 257 49.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.4e-57 226.5 257 49.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 3.2e-57 226.1 265 57.0
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 7.1e-57 224.9 263 62.4
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 9.2e-57 224.6 263 55.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.6e-56 222.2 263 58.6
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-55 220.7 265 48.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.7e-55 220.3 256 50.4
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 5.1e-55 218.8 263 55.5
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 6.6e-55 218.4 272 57.4
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.5e-54 217.2 263 51.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 2.5e-54 216.5 263 51.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 9.6e-54 214.5 270 58.5
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.6e-53 213.8 319 54.2
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.1e-53 213.4 270 46.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.8e-53 213.0 260 55.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 4.8e-53 212.2 262 46.9
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.2e-53 211.8 265 55.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 8.1e-53 211.5 267 52.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.1e-52 209.5 263 50.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.1e-52 209.5 263 46.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 4.0e-52 209.1 263 51.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.0e-51 206.8 263 46.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.6e-51 206.5 263 51.0
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.6e-51 206.5 319 40.8
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 4.4e-51 205.7 253 55.3
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 5.8e-51 205.3 264 50.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 7.6e-51 204.9 263 57.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 9.9e-51 204.5 319 43.9
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.9e-50 202.2 260 46.2
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.4e-50 201.8 252 48.4
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 6.4e-50 201.8 263 55.1
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.4e-50 201.4 263 45.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.9e-49 200.3 264 53.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.9e-49 200.3 264 53.8
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.4e-49 199.9 300 42.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.2e-49 199.1 336 44.9
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 7.1e-49 198.4 258 60.5
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-47 194.5 263 44.5
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.7e-47 193.7 271 49.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.9e-47 192.6 263 62.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.1e-46 191.0 264 45.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.5e-46 190.7 264 44.7
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 4.3e-46 189.1 263 50.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.6e-45 187.2 257 46.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.6e-45 187.2 298 42.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.1e-45 186.8 315 40.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.6e-45 186.0 180 54.4
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 8.1e-45 184.9 265 54.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.1e-44 184.5 263 48.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.1e-44 184.5 262 51.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-44 183.3 219 56.6
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-44 183.3 223 56.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.8e-43 178.7 268 47.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.3e-42 177.6 300 40.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.9e-42 176.4 243 44.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.4e-42 174.9 263 47.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.9e-41 173.7 180 55.0
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 3.2e-41 172.9 271 45.8
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 5.4e-41 172.2 268 41.4
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.6e-40 169.1 258 49.2
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.0e-40 168.7 224 47.3
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.0e-39 167.9 263 46.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.0e-39 167.9 259 41.3
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 5.1e-39 165.6 176 51.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 9.6e-38 161.4 263 44.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.8e-37 159.8 277 37.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.2e-37 158.7 258 42.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.9e-36 155.2 265 46.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.5e-35 154.1 260 50.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.0e-35 153.7 198 47.0
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.6e-35 153.3 210 41.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.9e-34 149.8 303 37.3
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 8.4e-34 148.3 263 45.2
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.2e-33 146.4 257 44.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.1e-33 145.2 319 43.6
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.2e-32 144.4 257 40.5
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.0e-31 141.4 262 48.1
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.7e-31 138.3 176 48.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-30 137.1 266 41.4
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 3.3e-30 136.3 208 46.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 7.4e-30 135.2 261 46.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-29 134.0 264 46.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.8e-29 133.3 240 43.8
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 6.2e-29 132.1 264 47.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.0e-28 129.4 240 35.4
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.2e-26 123.6 294 35.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.8e-26 122.9 240 46.7
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 5.0e-26 122.5 134 53.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.1e-25 121.3 293 43.0
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.4e-25 120.9 240 47.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-25 120.2 135 53.3
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 4.2e-25 119.4 104 58.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 9.3e-25 118.2 231 33.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.5e-24 116.3 241 41.1
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 6.1e-24 115.5 243 41.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-23 114.0 264 32.2
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 6.7e-23 112.1 245 34.3
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 6.7e-23 112.1 243 40.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-22 109.8 230 39.6
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.3e-22 109.8 230 39.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.2e-21 107.1 230 40.4
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 6.3e-21 105.5 246 33.3
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-20 104.8 230 41.7
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.4e-19 99.8 226 34.5
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.9e-18 96.7 139 43.9
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-18 95.9 269 28.3
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 5.0e-18 95.9 269 28.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.9e-17 94.0 139 45.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.9e-17 94.0 113 48.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.2e-17 92.0 300 26.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.7e-15 85.5 306 30.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 5.7e-14 82.4 95 50.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-12 78.2 125 33.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.6e-11 73.6 148 37.2
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.9e-11 72.4 143 32.9
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-09 68.2 120 35.8
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.1e-09 68.2 120 35.8
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 7.2e-09 65.5 104 49.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.2e-09 65.5 92 48.9
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.2e-09 65.5 92 48.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 9.4e-09 65.1 89 42.7
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.1e-08 62.4 54 57.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.0e-07 61.6 84 40.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.4e-07 61.2 108 34.3
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 8.8e-07 58.5 226 30.1
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.4e-06 56.2 54 51.9
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.7e-06 55.8 137 33.6


User provided reference genes

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