Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 0.0e+00 1167.1 627 100.0
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 0.0e+00 1084.3 627 94.4
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.2e-192 677.2 617 67.7
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 9.8e-190 667.5 722 58.7
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.6e-147 527.3 727 49.8
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.9e-140 503.8 724 48.9
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 6.2e-136 488.8 741 47.8
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 9.9e-134 481.5 762 46.6
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.4e-132 476.9 814 44.5
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 2.3e-130 470.3 751 46.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.9e-129 467.2 746 46.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 5.6e-129 465.7 737 46.1
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.6e-128 464.2 750 45.9
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.1e-128 463.8 792 43.6
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.8e-128 462.6 744 46.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 9.0e-127 458.4 750 45.6
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.0e-126 457.2 789 44.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 4.9e-125 452.6 738 45.5
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 7.1e-124 448.7 726 46.1
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 8.7e-122 441.8 817 43.3
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.3e-121 439.9 712 45.6
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.8e-120 436.8 759 44.0
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 8.2e-120 435.3 732 44.4
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.3e-117 427.9 785 42.4
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.2e-116 422.9 766 44.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.5e-116 422.5 716 45.1
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.2e-115 421.4 660 47.9
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 3.0e-114 416.8 684 46.6
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.9e-114 416.4 697 44.8
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 5.1e-114 416.0 803 41.7
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 5.7e-113 412.5 700 46.3
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 2.8e-112 410.2 817 39.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.7e-112 409.8 804 41.7
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.4e-111 407.1 825 38.9
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 6.9e-111 405.6 653 45.6
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 9.0e-111 405.2 697 44.6
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.2e-110 404.8 783 41.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.5e-110 404.4 643 43.9
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 3.4e-110 403.3 692 44.9
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.0e-109 401.7 764 41.8
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.7e-109 401.0 727 44.4
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.5e-108 397.1 700 44.6
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 7.2e-108 395.6 520 50.4
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.1e-107 394.0 793 38.8
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 2.1e-107 394.0 770 41.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 4.6e-107 392.9 876 38.0
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.8e-106 391.0 723 42.5
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.3e-106 390.6 770 41.2
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 8.8e-106 388.7 622 45.7
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.1e-105 388.3 800 40.8
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 4.3e-105 386.3 763 40.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.8e-104 383.6 582 46.6
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.8e-103 380.9 675 45.2
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.8e-103 380.9 675 44.7
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.1e-103 380.2 448 52.9
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 4.1e-103 379.8 722 39.5
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 5.3e-103 379.4 625 44.3
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 9.1e-103 378.6 705 43.0
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 3.4e-102 376.7 745 38.7
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.3e-101 374.8 695 42.6
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.7e-101 374.4 441 54.0
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.4e-100 371.3 549 46.8
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.9e-100 370.9 759 41.0
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.9e-100 370.9 662 43.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 4.2e-100 369.8 658 42.2
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.2e-99 368.2 553 46.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 6.1e-99 365.9 704 38.5
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.2e-96 357.5 686 41.7
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 4.8e-96 356.3 699 39.3
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 4.1e-95 353.2 757 37.5
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 5.3e-95 352.8 680 40.6
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 7.0e-95 352.4 730 40.7
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 7.7e-94 349.0 682 40.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 7.7e-94 349.0 811 38.5
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 8.5e-93 345.5 719 40.2
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 8.5e-93 345.5 707 41.3
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 5.5e-92 342.8 808 38.2
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.0e-90 337.0 677 39.7
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 3.3e-89 333.6 710 40.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 9.7e-89 332.0 681 39.6
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.7e-88 331.3 647 40.0
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.8e-88 330.5 625 40.8
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.8e-88 330.5 710 38.0
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.4e-87 328.2 393 51.7
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.4e-87 328.2 396 51.8
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.2e-86 325.1 680 39.6
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.7e-85 321.2 670 39.9
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.5e-84 318.2 815 35.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.3e-82 310.8 607 41.0
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 9.8e-81 305.4 652 41.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 6.3e-80 302.8 419 47.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 7.0e-79 299.3 645 40.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 3.2e-76 290.4 429 47.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.5e-76 289.7 518 45.6
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 4.0e-74 283.5 565 41.2
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.3e-72 278.5 679 37.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 9.5e-52 209.1 598 33.6
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 9.5e-52 209.1 598 33.6
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.3e-50 204.5 285 50.9
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.7e-48 198.4 309 45.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.1e-39 167.2 849 26.7
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.3e-36 157.5 332 38.6
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 3.4e-33 147.5 146 56.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 6.4e-32 143.3 272 40.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-29 135.6 509 32.6
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.2e-23 114.0 148 50.0
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 4.2e-23 114.0 131 50.4
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.6e-22 110.5 170 40.6
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.0e-21 109.4 309 33.0
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.5e-20 105.5 158 46.8
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 5.5e-15 87.0 331 35.0
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 6.7e-13 80.1 133 52.6
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 5.6e-12 77.0 94 44.7
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 6.9e-10 70.1 104 47.1
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.2e-09 69.3 129 41.1
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.7e-08 65.5 99 41.4
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 4.2e-07 60.8 122 37.7
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 7.1e-07 60.1 309 27.5
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 4.6e-06 57.4 112 40.2


User provided reference genes

Program Settings