Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.1e-69 266.9 176 100.0
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.1e-69 265.4 176 98.9
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.0e-67 258.1 176 97.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 9.2e-53 210.7 177 84.2
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.6e-52 208.4 178 83.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.4e-45 186.8 177 76.8
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 8.6e-43 177.6 177 76.8
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.4e-40 170.2 165 78.2
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.8e-40 169.9 173 62.4
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.8e-40 169.9 172 75.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.8e-40 169.9 177 62.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 78.2
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 78.2
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.3e-40 169.5 168 64.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 3.1e-40 169.1 170 61.8
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.1e-40 169.1 170 61.8
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.1e-40 169.1 170 61.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-39 167.2 173 62.4
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.5e-39 166.8 178 53.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 172 61.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-39 166.0 172 61.6
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.4e-39 165.2 174 64.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.8e-39 164.9 170 75.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 5.8e-39 164.9 161 65.2
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 9.9e-39 164.1 164 64.6
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.2e-38 162.9 177 51.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.9e-38 162.5 173 67.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.7e-38 162.2 164 62.8
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.7e-38 162.2 172 72.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 4.9e-38 161.8 172 73.3
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 6.4e-38 161.4 164 66.5
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 8.3e-38 161.0 164 64.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 8.3e-38 161.0 170 61.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.4e-37 160.2 168 63.1
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 3.2e-37 159.1 170 61.2
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.2e-37 159.1 169 66.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 4.1e-37 158.7 173 62.4
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.1e-37 158.7 176 71.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 5.4e-37 158.3 170 59.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 5.4e-37 158.3 170 74.1
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 7.1e-37 157.9 176 72.7
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.2e-36 157.1 168 60.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.2e-36 157.1 165 74.5
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.6e-36 156.8 167 74.9
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.6e-36 156.8 172 72.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.1e-36 156.4 154 74.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.7e-36 156.0 174 73.6
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.7e-36 156.0 170 71.8
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.5e-36 155.6 157 55.4
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 3.5e-36 155.6 151 76.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 4.6e-36 155.2 172 73.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 4.6e-36 155.2 169 59.8
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.0e-36 154.8 164 64.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 7.8e-36 154.5 164 74.4
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 7.8e-36 154.5 164 74.4
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 7.8e-36 154.5 170 64.1
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 172 61.6
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.7e-35 153.3 176 59.7
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.3e-35 152.9 164 62.2
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.3e-35 152.9 170 71.2
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.3e-35 152.9 165 74.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.9e-35 152.1 173 60.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 5.1e-35 151.8 170 68.2
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 5.1e-35 151.8 170 71.8
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 5.1e-35 151.8 177 71.8
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.1e-35 151.8 166 74.7
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.6e-35 151.4 170 61.2
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.5e-34 150.2 171 59.1
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.9e-34 149.8 173 71.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.9e-34 149.8 164 71.3
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 168 61.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 172 59.3
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.3e-34 149.1 172 58.7
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.3e-34 148.7 166 60.2
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 172 58.1
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 175 70.3
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 175 70.3
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 172 58.7
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 5.6e-34 148.3 172 58.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.3e-34 147.9 169 72.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 7.3e-34 147.9 164 72.0
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.5e-34 147.5 172 58.7
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.2e-33 147.1 158 62.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.6e-33 146.7 159 65.4
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.6e-33 146.7 167 73.7
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 164 59.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.6e-33 145.6 165 72.1
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 3.6e-33 145.6 164 68.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.2e-33 144.8 164 71.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.4e-32 143.7 166 59.0
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.8e-32 143.3 163 60.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.1e-32 142.5 164 58.5
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 4.0e-32 142.1 156 71.2
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 6.8e-32 141.4 158 73.4
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 6.8e-32 141.4 151 71.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.4e-31 139.0 161 73.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 9.9e-31 137.5 162 60.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 9.9e-31 137.5 172 70.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.9e-31 137.5 141 70.2
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 161 70.2
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 4.9e-30 135.2 163 69.9
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 6.4e-30 134.8 166 60.8
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.1e-29 134.0 161 55.9
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 151 72.8
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 151 72.8
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.9e-29 133.3 239 36.8
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.2e-29 132.5 164 44.5
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 7.1e-29 131.3 166 68.7
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.2e-28 130.6 165 55.2
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.2e-28 130.6 165 55.2
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.7e-28 129.4 164 45.7
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.7e-28 129.4 162 67.9
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.7e-28 129.4 143 61.5
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.5e-28 129.0 165 68.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 4.6e-28 128.6 164 45.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 6.0e-28 128.3 165 67.9
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.0e-28 128.3 168 53.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.8e-28 127.9 176 44.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-27 127.5 157 54.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-27 127.5 157 54.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.0e-27 127.5 157 54.8
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.7e-27 126.7 176 44.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.0e-27 125.9 167 66.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.9e-27 125.6 167 66.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.9e-27 125.6 167 66.5
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.1e-27 125.2 165 54.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.1e-27 125.2 167 65.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 8.7e-27 124.4 151 56.3
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.7e-27 124.4 165 43.6
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.3e-26 122.5 168 65.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 9.6e-26 120.9 166 66.3
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.2e-25 120.6 151 54.3
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.7e-25 118.6 165 62.4
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.1e-24 117.5 159 50.3
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.8e-24 116.7 142 71.1
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.1e-24 115.9 125 63.2
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.2e-23 114.0 146 56.8
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 3.2e-21 105.9 123 63.4
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 7.1e-21 104.8 117 64.1
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.3e-19 100.5 121 62.8
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.6e-18 95.1 86 57.0
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.6e-17 93.6 129 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.4e-16 89.7 107 41.1
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.4e-16 89.7 151 49.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 5.3e-16 88.6 97 69.1
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 4.5e-15 85.5 97 69.1
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.1e-12 76.6 85 45.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.5e-12 75.9 80 73.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.5e-10 69.7 42 71.4
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 5.6e-10 68.6 48 66.7


User provided reference genes

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