Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 2351.6 1270 100.0
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 2291.9 1270 97.3
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1904.0 1277 81.5
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1716.8 1288 71.1
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1514.2 1286 63.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1513.8 1222 66.2
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1288 64.0
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1494.6 1285 63.1
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1226 65.2
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1484.5 1226 63.5
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1474.9 1309 61.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1463.4 1116 75.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1456.0 1308 62.5
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1321 59.7
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1284 60.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1232 63.3
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1286 60.2
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1451.0 1300 60.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1451.0 1230 64.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1450.6 1242 61.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1450.6 1289 60.2
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1447.6 1358 60.3
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1444.1 1283 60.4
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1441.8 1282 62.9
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1284 62.1
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1438.7 1216 61.5
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1434.5 1282 60.1
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1431.8 1287 60.1
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1431.8 1230 60.4
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1431.4 1179 63.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1430.6 1216 62.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1283 59.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1423.3 1294 61.4
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1422.5 1285 59.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1421.8 1251 62.7
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1415.6 1284 59.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1414.4 1224 62.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1412.9 1289 59.2
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1409.4 1072 70.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1408.3 1289 59.2
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1407.5 1284 60.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1404.8 1237 61.2
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1402.9 1178 62.1
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1401.7 1287 58.4
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1400.2 1291 59.0
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1283 60.4
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1399.0 1284 59.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1398.6 1285 59.1
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1395.9 1251 58.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1395.6 1293 59.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1212 61.5
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1389.0 1213 60.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1387.5 1255 58.9
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1212 60.5
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1241 61.1
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1382.1 1198 59.7
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1381.7 1312 59.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1380.5 1201 60.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1227 58.6
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1371.7 1219 60.1
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1370.1 1237 59.2
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1368.6 1235 60.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1364.4 1295 58.6
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1354.7 1349 56.6
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1349.3 1262 58.6
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1345.5 1261 58.0
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1343.9 1306 57.4
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1341.6 1274 56.9
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1340.5 1229 59.2
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1337.8 1312 56.8
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1336.2 1213 61.2
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1284 57.4
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1326.2 1175 60.2
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1323.1 1284 57.2
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1315.8 1314 56.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1312.7 1272 57.3
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1309.3 1192 60.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1307.7 1299 56.4
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1304.7 1189 60.3
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1302.3 1310 57.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1300.0 1268 56.9
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1292.3 1307 57.2
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1291.2 1352 53.5
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1290.4 1255 56.1
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1282.7 1305 55.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1279.6 1217 59.0
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1278.8 1191 58.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1277.7 1187 60.0
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1277.7 1187 60.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1276.2 1192 59.7
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1260.4 1312 53.1
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1255.7 1250 56.8
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1243.8 1245 56.4
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1216.8 1179 57.9
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1190.3 1299 51.8
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1156.4 1250 52.7
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1151.7 1246 51.1
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1134.4 1219 52.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1116.3 1238 51.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1099.3 1286 49.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1091.6 1343 47.0
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1077.8 1248 50.2
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.1e-308 1062.8 1254 47.8
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 4.4e-306 1055.0 945 62.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 8.6e-294 1014.2 1255 47.5
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 3.4e-290 1002.3 1235 47.0
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 5.1e-286 988.4 752 67.6
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 7.3e-285 984.6 1221 46.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.6e-234 816.6 695 60.7
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.5e-232 810.1 1293 41.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.4e-222 777.7 1115 41.3
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 3.8e-164 583.6 539 62.5
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 3.2e-163 580.5 435 66.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 8.7e-153 545.8 1251 34.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.9e-150 536.2 1199 35.2
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.5e-149 533.5 816 44.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.9e-147 528.1 676 51.6
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.8e-143 514.2 449 60.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.8e-142 511.5 1201 32.8
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 3.8e-140 503.8 537 55.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.9e-139 501.5 1273 30.3
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 3.8e-132 477.2 608 46.1
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 7.9e-130 469.5 1274 31.6
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.3e-128 464.2 1131 30.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 6.5e-108 396.7 1045 31.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.3e-95 355.9 1041 30.6
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.3e-92 345.9 1321 27.6
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.5e-83 315.1 319 53.9
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.4e-72 278.1 235 62.1
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.6e-66 259.2 550 33.3
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.8e-65 255.8 547 33.1
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 3.0e-44 185.3 1207 24.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.7e-39 169.5 216 43.1
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.1e-38 166.8 1258 25.2
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.8e-28 132.9 129 51.9
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 8.2e-26 124.0 91 68.1
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.4e-25 122.5 161 44.7
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.2e-23 115.9 347 26.8
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.9e-22 112.8 187 36.9
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.0e-21 107.8 122 46.7
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 6.7e-20 104.4 138 47.1
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.1e-17 97.1 71 59.2
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.2e-15 89.4 61 70.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.8e-15 88.6 64 67.2
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.1e-14 87.0 112 49.1
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 4.2e-14 85.1 73 57.5
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 3.0e-12 79.0 72 54.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.1e-12 78.2 59 67.8
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.1e-12 78.2 59 67.8
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 5.1e-12 78.2 82 42.7
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.8e-10 72.4 163 33.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.4e-09 70.1 90 41.1
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 5.3e-09 68.2 37 86.5
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 9.1e-09 67.4 441 23.1


User provided reference genes

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