Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027059 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.9e-40 168.7 83 100.0
AUR62030902 Chenopodium quinoa HOM05D005406 ORTHO05D006599 6.5e-17 90.5 65 73.8
AUR62027061 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.5e-16 89.4 65 72.3
Rhsim05G0094300 Rhododendron simsii HOM05D005406 ORTHO05D006599 1.7e-12 75.9 82 47.6
PGR142G0824 Punica granatum HOM05D005406 ORTHO05D006599 2.8e-12 75.1 65 53.8
Nitab4.5_0001477g0200 Nicotiana tabacum HOM05D005406 ORTHO05D006599 3.7e-12 74.7 65 55.4
AUR62024183 Chenopodium quinoa HOM05D000799 ORTHO05D000629 4.8e-12 74.3 40 82.5
CANSAT25G3620 Cannabis sativa HOM05D005406 ORTHO05D006599 6.3e-12 73.9 65 55.4
Solyc01g106470.3 Solanum lycopersicum HOM05D005406 ORTHO05D006599 8.3e-12 73.6 65 55.4
CAN.G504.65 Capsicum annuum HOM05D005406 ORTHO05D006599 1.1e-11 73.2 65 53.8
AUR62038431 Chenopodium quinoa HOM05D002241 ORTHO05D002458 1.1e-11 73.2 37 91.9
Hma1.2p1_0435F.1_g152460 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 1.1e-11 73.2 65 53.8
Nitab4.5_0005609g0080 Nicotiana tabacum HOM05D005406 ORTHO05D006599 1.4e-11 72.8 65 53.8
Peaxi162Scf00299g00335 Petunia axillaris HOM05D005406 ORTHO05D006599 1.4e-11 72.8 65 53.8
Sopen01g048840 Solanum pennellii HOM05D005406 ORTHO05D006599 1.8e-11 72.4 65 53.8
Dinv16046 Davidia involucrata HOM05D005406 ORTHO05D006599 2.4e-11 72.0 65 52.3
Thecc.02G035200 Theobroma cacao HOM05D005406 ORTHO05D006599 2.4e-11 72.0 65 52.3
Lj6g0016064 Lotus japonicus HOM05D005406 ORTHO05D006599 3.1e-11 71.6 65 55.4
Gohir.D12G041200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 4.1e-11 71.2 65 52.3
Lalb_Chr18g0060221 Lupinus albus HOM05D005406 ORTHO05D006599 4.1e-11 71.2 82 47.6
Prupe.8G157400 Prunus persica HOM05D005406 ORTHO05D006599 4.1e-11 71.2 65 52.3
Duzib132G0847 Durio zibethinus HOM05D005406 ORTHO05D006599 5.4e-11 70.9 65 52.3
Gorai.008G043000 Gossypium raimondii HOM05D005406 ORTHO05D006599 5.4e-11 70.9 65 50.8
TWI14G0527 Tripterygium wilfordii HOM05D005406 ORTHO05D006599 5.4e-11 70.9 65 50.8
MSTRG.5302 Avicennia marina HOM05D005406 ORTHO05D006599 7.0e-11 70.5 65 52.3
Hund00407 Selenicereus undatus HOM05D005406 ORTHO05D006599 7.0e-11 70.5 65 50.8
EL10Ac9g22145 Beta vulgaris HOM05D005406 ORTHO05D006599 9.1e-11 70.1 65 53.8
CiPaw.05G025100 Carya illinoinensis HOM05D005406 ORTHO05D006599 9.1e-11 70.1 65 52.3
AUR62004441 Chenopodium quinoa HOM05D000273 ORTHO05D000198 9.1e-11 70.1 36 88.9
AUR62022330 Chenopodium quinoa HOM05D000522 ORTHO05D000565 9.1e-11 70.1 33 97.0
AUR62027688 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.1e-11 70.1 36 88.9
COL.COLO4_17837 Corchorus olitorius HOM05D005406 ORTHO05D006599 9.1e-11 70.1 65 50.8
Duzib248G0763 Durio zibethinus HOM05D005406 ORTHO05D006599 9.1e-11 70.1 61 55.7
Aqoxy6G00604 Aquilegia oxysepala HOM05D005406 ORTHO05D006599 1.2e-10 69.7 61 50.8
PGSC0003DMG400005102 Solanum tuberosum HOM05D005406 ORTHO05D006599 1.2e-10 69.7 65 53.8
Gohir.A12G031100 Gossypium hirsutum HOM05D005406 ORTHO05D006599 1.6e-10 69.3 65 49.2
Ah.01g024310 Amaranthus hybridus HOM05D005406 ORTHO05D006599 2.0e-10 68.9 65 52.3
Eucgr.I02516 Eucalyptus grandis HOM05D005406 ORTHO05D006599 2.0e-10 68.9 65 47.7
MD05G1112800 Malus domestica HOM05D005406 ORTHO05D006599 2.0e-10 68.9 65 50.8
Oeu014213.1 Olea europaea HOM05D005406 ORTHO05D006599 2.0e-10 68.9 65 53.8
Hund06489 Selenicereus undatus HOM05D005406 ORTHO05D006599 2.0e-10 68.9 59 55.9
vmacro19583 Vaccinium macrocarpon HOM05D005406 ORTHO05D006599 2.0e-10 68.9 65 50.8
Carub.0008s2531 Capsella rubella HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 50.8
Ciclev10028503m.g Citrus clementina HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 52.3
Cc02_g20410 Coffea canephora HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 50.8
Hma1.2p1_2001F.1_g310660 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 50.8
QL11p027148 Quercus lobata HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 50.8
TAR381G0409 Trochodendron aralioides HOM05D005406 ORTHO05D006599 2.7e-10 68.6 65 50.8
RcHm_v2.0_Chr6g0246311 Rosa chinensis HOM05D005406 ORTHO05D006599 3.5e-10 68.2 65 50.8
Aa31LG1G17410 Aethionema arabicum HOM05D005406 ORTHO05D006599 5.9e-10 67.4 65 49.2
AL8G41900 Arabidopsis lyrata HOM05D005406 ORTHO05D006599 5.9e-10 67.4 65 49.2
arahy.Tifrunner.gnm1.ann1.SJVP3Q Arachis hypogaea HOM05D005406 ORTHO05D006599 7.7e-10 67.0 65 50.8
CsaV3_7G007470 Cucumis sativus L. HOM05D005406 ORTHO05D006599 7.7e-10 67.0 65 49.2
HanXRQChr10g0291291 Helianthus annuus HOM05D005406 ORTHO05D006599 7.7e-10 67.0 65 52.3
Sabra09G0063200 Salix brachista HOM05D005406 ORTHO05D006599 7.7e-10 67.0 65 50.8
Sp2g27590 Schrenkiella parvula HOM05D005406 ORTHO05D006599 7.7e-10 67.0 65 49.2
A06p31250 Brassica napus HOM05D005406 ORTHO05D006599 1.0e-09 66.6 65 49.2
BraA06t26063Z Brassica rapa HOM05D005406 ORTHO05D006599 1.0e-09 66.6 65 49.2
FvH4_2g02400 Fragaria vesca HOM05D005406 ORTHO05D006599 1.0e-09 66.6 65 52.3
FAN24G0505 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.0e-09 66.6 65 52.3
Potri.009G081500 Populus trichocarpa HOM05D005406 ORTHO05D006599 1.3e-09 66.2 64 50.0
Sed0003204 Sechium edule HOM05D005406 ORTHO05D006599 1.3e-09 66.2 65 46.2
arahy.Tifrunner.gnm1.ann1.6V09A5 Arachis hypogaea HOM05D005406 ORTHO05D006599 1.7e-09 65.9 65 49.2
ClCG02G007430 Citrullus lanatus HOM05D005406 ORTHO05D006599 1.7e-09 65.9 65 49.2
ECA234G4519 Erigeron canadensis HOM05D005406 ORTHO05D006599 1.7e-09 65.9 61 52.5
Thhalv10004273m.g Eutrema salsugineum HOM05D005406 ORTHO05D006599 1.7e-09 65.9 65 47.7
CSS0000362 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 2.2e-09 65.5 65 47.7
CSS0039463 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 2.2e-09 65.5 65 47.7
FAN15G2054 Fragaria x ananassa HOM05D005406 ORTHO05D006599 2.2e-09 65.5 61 54.1
FAN20G2478 Fragaria x ananassa HOM05D005406 ORTHO05D006599 2.2e-09 65.5 61 54.1
AT5G64510 Arabidopsis thaliana HOM05D005406 ORTHO05D006599 2.9e-09 65.1 65 47.7
MELO3C018554.2 Cucumis melo HOM05D005406 ORTHO05D006599 2.9e-09 65.1 65 47.7
MD10G1115400 Malus domestica HOM05D005406 ORTHO05D006599 2.9e-09 65.1 65 46.2
Sed0011512 Sechium edule HOM05D005406 ORTHO05D006599 2.9e-09 65.1 65 47.7
Sc18g0007270 Simmondsia chinensis HOM05D005406 ORTHO05D006599 2.9e-09 65.1 65 47.7
GSVIVG01036961001 Vitis vinifera HOM05D005406 ORTHO05D006599 2.9e-09 65.1 66 48.5
Manes.07G049000 Manihot esculenta HOM05D005406 ORTHO05D006599 3.8e-09 64.7 65 50.8
GSVIVG01036964001 Vitis vinifera HOM05D005406 ORTHO05D006599 3.8e-09 64.7 65 49.2
CARHR278480 Cardamine hirsuta HOM05D005406 ORTHO05D006599 5.0e-09 64.3 65 49.2
Migut.B00502 Erythranthe guttata HOM05D005406 ORTHO05D006599 5.0e-09 64.3 82 45.1
MSTRG.16653 Avicennia marina HOM05D005406 ORTHO05D006599 8.5e-09 63.5 82 41.5
FAN27G0850 Fragaria x ananassa HOM05D005406 ORTHO05D006599 8.5e-09 63.5 65 50.8
TAR625G1228 Trochodendron aralioides HOM05D005406 ORTHO05D006599 8.5e-09 63.5 65 44.6
Gohir.D01G170000 Gossypium hirsutum HOM05D005406 ORTHO05D006599 1.1e-08 63.2 65 49.2
Gorai.002G211600 Gossypium raimondii HOM05D005406 ORTHO05D006599 1.1e-08 63.2 65 49.2
SalBow6G6746 Salvia bowleyana HOM05D005406 ORTHO05D006599 1.1e-08 63.2 65 44.6
C03p61740 Brassica napus HOM05D005406 ORTHO05D006599 1.5e-08 62.8 65 47.7
BolC3t18435H Brassica oleracea HOM05D005406 ORTHO05D006599 1.5e-08 62.8 65 47.7
Gohir.A01G179200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 1.5e-08 62.8 65 49.2
Psat1g212280 Pisum sativum HOM05D005406 ORTHO05D006599 2.5e-08 62.0 65 50.8
Atru.chr5.2137 Acer truncatum HOM05D005406 ORTHO05D006599 3.2e-08 61.6 65 44.6
Cpa.g.sc20.64 Carica papaya HOM05D005406 ORTHO05D006599 4.2e-08 61.2 82 41.5
DCAR_021922 Daucus carota HOM05D005406 ORTHO05D006599 5.5e-08 60.8 65 41.5
Cfa004762 Carpinus fangiana HOM05D005406 ORTHO05D006599 7.2e-08 60.5 65 44.6
Haze_10359 Corylus avellana HOM05D005406 ORTHO05D006599 7.2e-08 60.5 65 44.6
THA.LOC104819322 Tarenaya hassleriana HOM05D005406 ORTHO05D006599 9.4e-08 60.1 65 44.6
SalBow6G6486 Salvia bowleyana HOM05D005406 ORTHO05D006599 1.6e-07 59.3 65 43.1
Ca_00193_v3 Cicer arietinum L. HOM05D005406 ORTHO05D006599 2.1e-07 58.9 65 44.6
Medtr2g010460 Medicago truncatula HOM05D005406 ORTHO05D006599 2.1e-07 58.9 65 46.2
SHI04907 Sapria himalayana HOM05D005406 ORTHO05D006599 2.1e-07 58.9 65 43.1
ECA236G2632 Erigeron canadensis HOM05D005406 ORTHO05D006599 3.6e-07 58.2 65 41.5
unitig_699.g19863 Utricularia gibba HOM05D005406 ORTHO05D006599 3.6e-07 58.2 66 43.9
Glyma.15G061500 Glycine max HOM05D005406 ORTHO05D006599 1.4e-06 56.2 79 43.0
PSO675G0725 Papaver somniferum HOM05D005406 ORTHO05D006599 1.4e-06 56.2 65 41.5
Phvul.006G198300 Phaseolus vulgaris HOM05D005406 ORTHO05D006599 1.8e-06 55.8 65 44.6
VMungo0540G2475 Vigna mungo HOM05D005406 ORTHO05D006599 2.3e-06 55.5 65 43.1
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 3.0e-06 55.1 65 43.1
HanXRQChr03g0075901 Helianthus annuus HOM05D005406 ORTHO05D006599 3.0e-06 55.1 83 42.2
MBI16_g33605_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 4.0e-06 54.7 66 43.9
PSO541G4550 Papaver somniferum HOM05D005406 ORTHO05D006599 4.0e-06 54.7 65 40.0
Manes.10G090700 Manihot esculenta HOM05D005406 ORTHO05D006599 8.8e-06 53.5 65 44.6


User provided reference genes

Program Settings