Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-25 119.4 67 100.0
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.2e-22 107.5 68 91.2
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 6.2e-18 93.6 66 80.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.1e-18 93.2 66 75.8
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 80.3
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 80.3
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-17 92.4 63 79.4
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.8e-17 92.0 64 79.7
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.4e-17 91.7 66 78.8
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 4.0e-17 90.9 66 78.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.3e-17 90.5 66 74.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 6.9e-17 90.1 66 77.3
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 6.9e-17 90.1 66 77.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.2e-16 89.4 63 76.2
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.2e-16 89.4 66 77.3
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 75.8
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 77.3
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.6e-16 88.2 66 74.2
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 3.4e-16 87.8 69 73.9
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.5e-16 87.4 66 75.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 4.5e-16 87.4 66 77.3
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.5e-16 87.4 66 75.8
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 5.8e-16 87.0 57 87.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 5.8e-16 87.0 65 75.4
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 9.9e-16 86.3 66 74.2
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 9.9e-16 86.3 63 77.8
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 9.9e-16 86.3 64 76.6
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.3e-15 85.9 63 77.8
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.2e-15 85.1 66 74.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.2e-15 85.1 66 72.7
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 75.4
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.9e-15 84.7 63 74.6
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.9e-15 84.7 63 76.2
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.9e-15 84.7 66 74.2
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.9e-15 84.7 66 71.2
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.8e-15 84.3 63 76.2
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-15 84.3 66 72.7
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.8e-15 84.3 66 71.2
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 3.8e-15 84.3 66 74.2
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 3.8e-15 84.3 66 72.7
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 4.9e-15 84.0 66 72.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 6.4e-15 83.6 66 71.2
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 6.4e-15 83.6 66 74.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.4e-15 83.6 66 71.2
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 8.4e-15 83.2 66 74.2
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.4e-15 83.2 66 69.7
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.1e-14 82.8 63 76.2
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 74.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.1e-14 82.8 63 76.2
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.4e-14 82.4 66 71.2
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-14 82.4 66 72.7
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.9e-14 82.0 64 71.9
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.4e-14 81.6 66 69.7
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.2e-14 81.3 63 74.6
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.2e-14 80.9 61 77.0
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.5e-14 80.5 63 74.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 5.5e-14 80.5 67 71.6
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 5.5e-14 80.5 67 71.6
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 5.5e-14 80.5 64 73.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.5e-14 80.5 69 66.7
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.5e-14 80.5 69 66.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 7.1e-14 80.1 56 82.1
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 9.3e-14 79.7 68 73.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.3e-14 79.7 66 71.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-13 79.0 64 71.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.6e-13 79.0 66 69.7
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.6e-13 79.0 66 69.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.1e-13 78.6 66 69.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.1e-13 78.6 66 68.2
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.1e-13 78.6 66 68.2
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.7e-13 78.2 63 68.3
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.5e-13 77.8 66 65.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 6.0e-13 77.0 60 73.3
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 6.0e-13 77.0 75 68.0
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 7.9e-13 76.6 63 69.8
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.0e-12 76.3 59 76.3
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.0e-12 76.3 63 69.8
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 67.2
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.0e-12 74.7 68 66.2
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.1e-12 73.9 53 81.1
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.1e-11 72.8 66 63.6
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.5e-11 72.4 66 63.6
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.9e-11 72.0 64 67.2
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 3.3e-11 71.2 67 61.2
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 4.3e-11 70.9 66 62.1
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 5.6e-11 70.5 67 62.7
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 5.6e-11 70.5 67 62.7
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 7.4e-11 70.1 66 65.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 2.1e-10 68.6 67 61.2
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.1e-10 68.6 63 60.3
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 2.1e-10 68.6 67 61.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 2.1e-10 68.6 67 61.2
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.1e-10 68.6 63 60.3
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 6.2e-10 67.0 66 59.1
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.1e-09 64.7 59 59.3
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.1e-09 64.7 59 59.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 5.8e-08 60.5 57 61.4
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 7.6e-08 60.1 54 68.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 7.6e-08 60.1 57 61.4
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.6e-08 60.1 61 57.4
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.0e-07 59.7 57 59.6
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-07 58.5 61 55.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.2e-07 58.5 57 57.9
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 2.9e-07 58.2 77 50.6
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.8e-07 57.8 61 54.1
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 3.8e-07 57.8 57 56.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.5e-07 57.0 61 55.7
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.5e-07 57.0 57 57.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.9e-06 55.5 61 55.7
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.9e-06 55.5 57 57.9
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.9e-06 55.5 57 57.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-06 55.1 57 54.4
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.5e-06 55.1 57 57.9
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.5e-06 55.1 61 54.1
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.5e-06 55.1 47 70.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.5e-06 55.1 61 54.1
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.2e-06 54.7 55 58.2
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 3.2e-06 54.7 57 52.6
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.2e-06 54.7 57 52.6
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.2e-06 54.3 57 56.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.2e-06 54.3 61 55.7
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.1e-06 53.5 64 53.1
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.1e-06 53.5 57 56.1
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 9.3e-06 53.1 55 54.5


User provided reference genes

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