Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 0.0e+00 1137.5 609 100.0
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 6.0e-285 983.8 603 89.7
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 7.7e-216 754.2 630 68.1
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 1.6e-176 623.6 587 63.0
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 2.5e-142 510.0 692 47.8
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 9.4e-121 438.3 661 42.2
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.6e-118 430.3 661 41.9
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 5.7e-118 429.1 664 43.2
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 6.3e-117 425.6 661 41.6
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 1.2e-115 421.4 667 43.2
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 3.2e-113 413.3 662 41.1
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 4.2e-113 412.9 659 40.8
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 5.5e-113 412.5 664 42.6
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.6e-112 411.0 669 40.5
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 8.8e-111 405.2 671 41.1
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 9.7e-110 401.7 652 42.6
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 2.2e-109 400.6 670 39.9
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 4.8e-109 399.4 665 40.8
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.1e-108 398.3 665 40.8
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.0e-107 394.0 684 41.1
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.6e-107 393.7 684 41.1
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 2.6e-107 393.7 667 40.5
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 4.5e-107 392.9 664 40.8
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 5.9e-107 392.5 667 40.9
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 5.0e-106 389.4 657 38.5
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 6.5e-106 389.0 664 40.4
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.1e-105 388.3 663 40.4
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.9e-105 387.5 628 41.7
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 7.2e-105 385.6 686 39.1
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.6e-104 384.4 666 38.9
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.6e-104 384.4 649 40.8
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.4e-103 381.3 666 38.7
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 3.0e-103 380.2 643 40.3
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 6.7e-103 379.0 630 41.6
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 9.7e-102 375.2 650 40.0
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 9.7e-102 375.2 649 41.4
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.7e-101 373.2 723 38.0
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 3.7e-101 373.2 664 39.8
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 8.2e-101 372.1 699 38.3
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.1e-100 371.7 661 39.2
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.4e-100 371.3 654 39.8
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 3.1e-100 370.2 654 39.3
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 4.1e-100 369.8 661 38.7
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.1e-100 369.8 683 37.9
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.3e-100 369.4 634 40.2
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 1.3e-98 364.8 656 38.4
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.7e-98 364.4 656 38.0
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.2e-98 364.0 664 39.3
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 5.0e-98 362.8 659 38.7
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 5.0e-98 362.8 663 38.9
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 6.5e-98 362.5 645 37.2
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 1.1e-97 361.7 657 39.3
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 3.2e-97 360.1 671 38.3
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 4.2e-97 359.8 653 40.0
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 5.5e-97 359.4 663 38.8
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 5.5e-97 359.4 660 37.7
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 9.4e-97 358.6 661 38.6
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.6e-96 357.8 795 37.0
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 3.6e-96 356.7 640 38.1
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 1.0e-95 355.1 663 38.5
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.4e-95 354.8 647 37.2
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 5.2e-95 352.8 647 36.8
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 3.4e-94 350.1 662 37.5
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 5.7e-94 349.4 692 36.7
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 9.8e-94 348.6 657 37.4
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 8.3e-93 345.5 637 37.7
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 9.1e-92 342.0 805 33.9
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 2.7e-91 340.5 752 35.4
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.7e-90 337.8 660 36.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.7e-90 337.8 668 37.1
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 6.5e-90 335.9 684 34.8
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 4.2e-89 333.2 688 35.2
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.2e-88 331.6 623 37.7
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 6.1e-88 329.3 688 34.9
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 8.0e-88 328.9 659 35.7
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 4.0e-87 326.6 656 35.4
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 5.2e-87 326.2 688 34.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 8.8e-87 325.5 662 37.2
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.2e-86 325.1 663 35.9
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 2.0e-86 324.3 712 34.0
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 5.7e-86 322.8 619 37.8
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 1.3e-85 321.6 676 33.7
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.8e-84 317.8 651 36.3
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 3.1e-84 317.0 509 40.3
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 9.2e-84 315.5 713 33.5
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.6e-83 314.7 618 36.4
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 1.9e-81 307.8 538 39.6
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.3e-73 280.4 667 33.1
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 6.2e-72 276.2 621 37.2
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 3.4e-70 270.4 633 33.5
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 8.3e-69 265.8 462 39.0
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.1e-68 265.4 591 33.7
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 7.8e-67 259.2 490 38.2
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.3e-66 258.5 464 40.1
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 9.5e-65 252.3 430 40.2
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.1e-64 251.1 643 32.3
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 5.2e-63 246.5 394 41.1
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 3.7e-61 240.4 534 35.0
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.7e-61 240.4 416 41.3
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.9e-61 240.0 399 41.6
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 4.4e-54 216.9 510 33.1
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.1e-52 210.3 511 33.9
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.4e-46 190.7 320 42.5
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 6.2e-40 169.9 273 43.6
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.1e-40 169.5 150 61.3
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.5e-38 163.7 206 46.6
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 4.9e-37 160.2 271 40.2
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.7e-34 149.8 207 42.5
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 1.6e-32 145.2 164 48.2
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.8e-32 144.4 522 27.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.7e-32 144.1 166 50.0
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 6.7e-26 123.2 174 43.1
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 1.9e-25 121.7 741 24.0
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 4.8e-24 117.1 282 31.9
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.4e-23 114.8 806 23.0
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 5.8e-22 110.2 179 37.4
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 4.6e-19 100.5 94 56.4
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.8e-18 98.6 186 33.3
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 2.5e-17 94.7 78 61.5
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 3.4e-14 84.3 103 47.6
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 7.2e-12 76.6 98 45.9
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.6e-11 73.9 81 54.3
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.0e-10 71.2 78 53.8
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.1e-09 69.3 78 53.8
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 6.3e-08 63.5 52 59.6
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.4e-06 57.8 48 66.7


User provided reference genes

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