Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 0.0e+00 1399.4 790 100.0
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 0.0e+00 1204.5 798 83.3
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 4.2e-299 1031.2 867 67.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.4e-248 862.1 841 59.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 7.6e-248 860.9 826 57.9
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 7.6e-248 860.9 820 58.3
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-247 859.8 839 56.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.9e-247 859.0 818 59.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 4.6e-245 851.7 825 56.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.6e-242 843.2 857 57.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.8e-242 842.4 822 57.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 4.8e-242 841.6 784 60.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 3.1e-241 839.0 843 56.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 5.3e-241 838.2 826 57.3
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-239 833.6 839 56.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.2e-239 832.8 833 56.3
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.4e-239 831.2 830 56.4
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.1e-238 830.5 841 55.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.1e-238 830.5 835 55.4
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.4e-238 829.3 838 55.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 3.2e-238 828.9 837 55.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.2e-238 828.9 836 55.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 4.2e-238 828.6 827 54.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.2e-238 828.6 835 55.8
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.5e-237 825.5 827 55.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.3e-236 822.8 833 54.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.3e-236 822.8 834 55.8
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 8.7e-236 820.8 824 56.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-235 820.5 797 57.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.5e-235 820.1 838 55.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.9e-235 819.7 838 55.7
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.7e-234 815.5 812 55.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.2e-234 814.7 812 55.7
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.1e-234 814.3 821 54.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-233 813.9 827 54.3
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.4e-233 812.8 831 54.6
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.4e-233 812.8 833 54.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.3e-233 811.6 818 54.6
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 5.3e-233 811.6 828 55.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.9e-233 811.2 822 55.4
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 9.0e-233 810.8 830 55.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.5e-232 810.1 828 55.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.6e-232 809.3 836 55.3
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.6e-232 807.7 835 54.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.0e-231 807.4 835 56.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.0e-231 807.4 840 55.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.9e-231 805.8 833 57.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 4.9e-231 805.1 829 55.5
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 6.5e-231 804.7 827 54.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 8.4e-231 804.3 825 54.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.1e-230 803.9 831 54.4
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.2e-230 802.4 826 54.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 4.2e-230 802.0 825 54.2
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.5e-230 801.6 825 53.9
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 5.5e-230 801.6 818 54.2
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 7.1e-230 801.2 825 57.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.2e-229 800.4 827 54.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.6e-229 800.0 827 54.9
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.0e-229 798.1 850 53.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.3e-228 796.2 828 54.7
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 5.1e-228 795.0 834 55.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.9e-227 793.1 822 54.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.3e-227 792.3 837 55.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.3e-227 792.0 841 54.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.3e-227 792.0 828 54.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 5.7e-227 791.6 832 54.8
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.8e-226 789.3 833 57.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.3e-226 788.1 829 54.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 8.2e-226 787.7 840 54.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.6e-224 781.2 816 54.0
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 6.7e-220 768.1 819 53.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.5e-219 766.1 815 54.4
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.7e-218 762.3 841 54.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.0e-217 757.7 841 54.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.7e-211 738.4 841 53.4
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 9.7e-211 737.6 826 52.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 7.7e-208 728.0 855 53.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.5e-206 723.0 832 49.6
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 7.2e-206 721.5 803 53.2
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.7e-205 718.8 927 47.0
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 6.1e-205 718.4 853 52.3
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.7e-202 709.1 799 52.3
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.7e-202 709.1 799 52.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.4e-201 707.2 799 52.3
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.8e-201 706.8 843 50.9
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-201 706.4 801 51.9
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-201 706.4 801 51.9
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.2e-200 704.1 835 50.2
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 3.2e-198 696.0 833 51.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.6e-197 693.7 826 49.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.1e-197 693.3 825 50.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 4.7e-197 692.2 828 51.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 3.5e-192 676.0 833 49.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 5.0e-191 672.2 832 48.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-183 647.5 661 55.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.9e-183 646.4 842 45.7
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.5e-182 644.0 814 46.4
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.7e-181 639.8 838 45.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.2e-168 597.8 619 54.6
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 5.9e-168 595.5 675 50.8
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-167 594.7 548 57.3
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 5.1e-151 539.3 585 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.8e-141 506.9 866 37.9
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-138 497.7 606 49.8
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.6e-136 489.6 442 60.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.2e-128 464.9 796 39.7
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.3e-127 460.7 842 38.8
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.8e-125 453.0 870 37.7
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.1e-120 437.6 377 62.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.5e-112 410.2 480 51.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.8e-101 374.0 662 34.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.4e-94 350.1 446 47.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.2e-93 345.9 385 50.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-92 345.1 303 58.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.3e-87 327.8 422 44.3
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.0e-83 314.7 288 58.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-76 292.0 321 53.3
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.2e-73 280.8 448 37.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-70 272.3 236 60.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.0e-70 271.6 241 60.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.7e-69 267.3 200 65.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.3e-66 258.1 323 43.7
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.3e-61 242.3 573 31.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-60 238.0 295 49.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.5e-57 228.0 195 61.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.9e-53 213.8 224 54.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 5.4e-52 210.3 226 49.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 9.2e-52 209.5 145 71.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-45 188.0 181 57.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.4e-44 183.7 265 44.9
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.6e-40 172.2 214 49.5
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 2.9e-37 161.4 153 56.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-36 159.1 145 57.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.2e-35 156.0 170 52.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-30 138.7 128 59.4
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.4e-28 131.7 163 46.0
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.4e-28 130.6 575 25.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 5.1e-26 124.0 682 23.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.5e-25 121.7 106 63.2
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 4.7e-24 117.5 234 40.6
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.4e-22 111.3 513 23.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 5.8e-22 110.5 235 39.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 3.8e-21 107.8 247 37.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.8e-21 107.8 104 54.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 3.5e-19 101.3 71 59.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 8.1e-16 90.1 101 45.5
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.0e-15 87.8 73 58.9
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.0e-15 87.8 78 61.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.1e-11 75.5 186 34.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.3e-10 72.0 61 49.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.5e-09 68.6 56 62.5
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 7.4e-09 67.0 57 49.1
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 4.8e-08 64.3 57 54.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 5.3e-07 60.8 172 41.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-06 59.3 50 56.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.6e-06 57.0 156 26.3


User provided reference genes

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