Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.5e-46 189.1 94 100.0
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.8e-39 165.6 85 95.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 6.4e-37 157.1 85 90.6
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.7e-35 151.8 85 87.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.5e-35 151.4 85 87.1
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.6e-35 151.0 83 88.0
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 6.0e-35 150.6 83 88.0
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 6.0e-35 150.6 85 87.1
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 7.9e-35 150.2 83 88.0
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.3e-34 149.4 83 84.3
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.3e-34 149.4 83 88.0
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.8e-34 149.1 85 85.9
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.3e-34 148.7 85 87.1
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.3e-34 148.7 85 84.7
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 3.0e-34 148.3 85 84.7
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.9e-34 147.9 83 86.7
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 3.9e-34 147.9 85 85.9
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 6.7e-34 147.1 85 84.7
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 6.7e-34 147.1 90 80.0
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 6.7e-34 147.1 85 84.7
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 8.7e-34 146.7 85 83.5
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 8.7e-34 146.7 83 84.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 8.7e-34 146.7 85 84.7
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.1e-33 146.4 83 85.5
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.1e-33 146.4 85 83.5
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.1e-33 146.4 85 84.7
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.5e-33 146.0 85 84.7
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.5e-33 146.0 83 85.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.5e-33 146.0 82 87.8
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.9e-33 145.6 83 84.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.5e-33 145.2 85 83.5
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 2.5e-33 145.2 82 86.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 3.3e-33 144.8 85 83.5
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.3e-33 144.8 85 83.5
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 4.3e-33 144.4 83 84.3
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.3e-33 144.4 83 86.7
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 5.6e-33 144.1 85 82.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.6e-33 144.1 83 81.9
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 7.4e-33 143.7 85 82.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 7.4e-33 143.7 85 83.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 9.6e-33 143.3 85 83.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.3e-32 142.9 85 83.5
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.6e-32 142.5 85 81.2
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.6e-32 142.5 83 84.3
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.1e-32 142.1 82 80.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.1e-32 142.1 85 78.8
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.8e-32 141.7 83 83.1
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 2.8e-32 141.7 81 85.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.7e-32 141.4 82 79.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 3.7e-32 141.4 81 85.2
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 6.2e-32 140.6 85 77.6
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.2e-32 140.6 85 82.4
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.2e-32 140.6 85 82.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.2e-32 140.6 85 82.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 8.1e-32 140.2 85 82.4
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.1e-31 139.8 81 84.0
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.4e-31 139.4 81 82.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.4e-31 138.7 85 77.6
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.1e-31 138.3 83 79.5
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.3e-31 137.5 82 80.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.3e-31 137.5 83 79.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 6.9e-31 137.1 83 81.9
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 6.9e-31 137.1 81 82.7
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 9.0e-31 136.7 82 78.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.2e-30 136.3 80 85.0
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.2e-30 136.3 81 80.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.5e-30 136.0 78 83.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.0e-30 135.6 83 75.9
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.0e-30 135.6 81 81.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.0e-30 135.6 85 78.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.6e-30 135.2 81 80.2
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 3.4e-30 134.8 81 80.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-30 134.4 82 75.6
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.5e-30 134.4 82 75.6
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 4.5e-30 134.4 82 79.3
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.5e-30 134.4 82 75.6
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.6e-30 133.7 83 75.9
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 7.6e-30 133.7 83 75.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.9e-30 133.3 82 75.6
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.9e-30 133.3 82 75.6
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 9.9e-30 133.3 82 78.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.3e-29 132.9 78 80.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.7e-29 132.5 85 75.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.2e-29 132.1 82 74.4
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.9e-29 131.7 92 75.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.8e-29 131.3 85 76.5
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.4e-28 129.4 85 75.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 9.3e-28 126.7 85 78.8
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 4.6e-27 124.4 85 71.8
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 7.9e-27 123.6 82 74.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.3e-25 118.2 81 75.3
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.3e-25 118.2 81 75.3
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.4e-23 112.8 82 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 6.9e-23 110.5 79 68.4
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 7.6e-22 107.1 78 67.9
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.3e-21 106.3 78 71.8
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-20 100.5 73 58.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 7.1e-20 100.5 73 58.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 7.1e-20 100.5 73 58.9
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 9.3e-20 100.1 74 62.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-19 99.8 74 60.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-19 99.0 73 58.9
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.6e-19 97.8 73 57.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 6.0e-19 97.4 74 60.8
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 6.0e-19 97.4 73 57.5
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 6.0e-19 97.4 74 60.8
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 6.0e-19 97.4 73 57.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.9e-19 97.1 83 53.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.9e-19 97.1 74 59.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-18 96.7 79 55.7
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.9e-18 94.7 53 84.9
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.9e-18 94.7 74 56.8
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-18 94.4 74 59.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 6.7e-18 94.0 74 58.1
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.7e-18 94.0 73 54.8
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.1e-17 93.2 77 61.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-17 92.8 74 54.1
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-17 92.4 74 52.7
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.5e-17 92.0 74 55.4
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.5e-17 92.0 76 56.6
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 4.3e-17 91.3 74 56.8
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.3e-17 91.3 74 55.4
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.7e-17 90.9 74 51.4
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.4e-17 90.5 72 55.6
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.4e-17 90.5 73 52.1
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.7e-17 90.1 72 55.6
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.3e-16 89.7 74 51.4
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-16 89.7 73 54.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-16 89.4 74 50.0
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.8e-16 88.6 73 54.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.7e-16 88.2 74 55.4
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 6.3e-16 87.4 74 48.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 8.2e-16 87.0 74 48.6
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 8.2e-16 87.0 55 70.9
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-15 86.7 74 55.4
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-15 86.7 74 52.7
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-15 85.9 73 52.1
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 5.3e-15 84.3 74 52.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.3e-15 84.3 74 52.7
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-14 83.2 73 47.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.2e-14 83.2 74 50.0
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-14 82.4 72 51.4
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-14 82.4 72 51.4
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.2e-13 79.0 74 45.9
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.8e-13 78.2 64 50.0
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.8e-13 78.2 53 71.7
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.8e-13 78.2 53 71.7
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-11 72.8 74 50.0
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-11 71.2 56 53.6
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-10 70.1 60 51.7
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.0e-10 68.6 54 55.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-07 58.9 53 49.1


User provided reference genes

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