Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 2.1e-258 895.2 459 100.0
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.4e-172 610.1 365 83.6
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.2e-151 539.7 359 76.9
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.0e-147 526.6 373 70.0
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.7e-146 523.5 373 71.3
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.7e-146 523.5 367 71.4
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 4.9e-146 521.9 348 74.7
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 1.2e-144 517.3 387 68.2
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 5.9e-144 515.0 357 72.5
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 2.9e-143 512.7 360 71.4
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 3.8e-143 512.3 376 70.5
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 7.3e-142 508.1 379 68.3
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.3e-140 503.1 343 73.5
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.0e-140 502.7 370 68.9
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 4.0e-140 502.3 366 70.5
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 4.0e-140 502.3 369 69.4
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.2e-139 500.7 344 73.8
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 1.2e-139 500.7 356 70.8
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 2.6e-139 499.6 349 71.9
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 2.6e-139 499.6 354 70.6
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 4.4e-139 498.8 362 69.9
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 7.5e-139 498.0 350 72.3
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 7.5e-139 498.0 354 71.8
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.7e-138 496.9 347 71.5
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 2.2e-138 496.5 364 69.8
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 3.7e-138 495.7 377 68.2
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 6.4e-138 495.0 372 68.5
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 8.3e-138 494.6 373 67.3
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.4e-137 493.8 348 71.6
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 2.4e-137 493.0 349 70.8
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 3.2e-137 492.7 377 67.9
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 5.4e-137 491.9 368 67.1
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 5.4e-137 491.9 316 75.6
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 9.2e-137 491.1 372 69.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 2.0e-136 490.0 372 67.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.7e-136 489.6 378 65.9
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 5.9e-136 488.4 357 70.0
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 3.0e-135 486.1 357 68.3
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 3.9e-135 485.7 348 69.8
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 5.0e-135 485.3 308 76.0
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 5.0e-135 485.3 376 66.2
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 5.0e-135 485.3 352 71.3
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 1.5e-134 483.8 360 67.8
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 9.5e-134 481.1 367 65.9
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.6e-133 480.3 371 67.1
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.6e-133 480.3 313 74.1
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.6e-133 480.3 313 73.8
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.1e-133 479.9 373 67.0
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.8e-133 479.6 371 67.1
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.7e-133 478.8 371 67.4
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 8.0e-133 478.0 353 69.1
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 8.0e-133 478.0 328 71.6
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.4e-132 477.2 341 70.4
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.8e-132 476.9 402 63.2
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 3.1e-132 476.1 372 66.9
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 2.6e-131 473.0 365 67.7
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 3.4e-131 472.6 315 74.6
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.3e-130 470.7 340 68.5
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.7e-130 470.3 359 68.5
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.7e-130 470.3 318 74.8
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.2e-130 469.9 313 72.5
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 4.9e-130 468.8 382 64.9
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 6.4e-130 468.4 410 60.5
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 8.3e-130 468.0 374 66.0
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.1e-129 467.6 373 66.5
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.4e-129 467.2 354 68.6
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 2.4e-129 466.5 308 74.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 2.4e-129 466.5 369 66.1
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.4e-129 466.5 383 65.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 7.0e-129 464.9 371 65.8
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 7.0e-129 464.9 371 65.2
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.7e-128 463.0 371 65.8
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 3.5e-128 462.6 371 65.5
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 4.6e-128 462.2 370 65.1
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 7.8e-128 461.5 283 79.2
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-127 460.7 371 65.2
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.9e-127 459.1 366 65.3
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 5.0e-127 458.8 382 62.3
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 6.6e-127 458.4 351 64.7
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 8.6e-127 458.0 285 77.9
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.5e-126 457.2 384 63.3
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 3.3e-126 456.1 371 64.7
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 4.3e-126 455.7 370 64.1
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 5.6e-126 455.3 370 63.2
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 5.6e-126 455.3 380 63.2
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 3.6e-125 452.6 318 71.7
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 6.2e-125 451.8 316 71.5
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.3e-124 449.9 361 64.3
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 3.1e-124 449.5 316 71.2
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 6.8e-124 448.4 318 70.8
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 6.8e-124 448.4 318 70.8
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 6.8e-124 448.4 285 76.5
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 5.8e-123 445.3 318 70.1
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 5.8e-123 445.3 377 61.8
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 9.9e-123 444.5 317 71.0
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.3e-122 444.1 362 61.3
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.7e-122 443.7 353 63.5
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 8.3e-122 441.4 315 67.0
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.1e-121 441.0 426 56.6
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 6.2e-117 425.2 264 79.2
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.2e-115 421.0 313 67.1
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 4.4e-115 419.1 340 65.3
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 7.1e-113 411.8 246 80.9
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.1e-112 410.2 257 77.0
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 7.6e-99 365.2 263 69.2
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-96 357.8 366 53.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 2.7e-96 356.7 361 51.8
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.7e-96 356.7 311 57.6
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 8.7e-95 351.7 289 61.6
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 1.3e-93 347.8 325 56.0
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 1.6e-93 347.4 237 73.8
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.4e-92 343.6 368 54.3
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 8.4e-90 335.1 375 51.2
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.9e-88 328.6 283 60.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 1.0e-87 328.2 373 51.5
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 9.6e-86 321.6 195 79.0
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.2e-82 310.5 332 49.7
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.7e-79 298.9 262 62.2
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.6e-77 294.3 377 47.5
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 6.3e-77 292.4 275 54.9
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 9.0e-76 288.5 176 79.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.5e-75 286.2 198 71.7
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.4e-68 264.6 355 40.0
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.3e-62 243.4 198 64.6
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.7e-61 241.1 164 73.2
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.8e-61 240.4 188 64.9
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 5.3e-60 236.1 330 42.7
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.0e-58 231.9 187 63.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 6.5e-58 229.2 165 70.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.2e-56 224.9 177 65.5
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 5.7e-54 216.1 343 39.7
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.1e-52 211.8 121 82.6
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.4e-52 211.5 197 56.9
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 6.5e-50 202.6 128 71.9
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 9.4e-49 198.7 184 54.3
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.1e-48 196.1 305 35.1
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.5e-46 191.4 256 41.0
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.7e-45 188.0 162 59.9
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.7e-43 179.1 365 33.2
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.5e-33 148.3 129 58.9
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 1.4e-31 141.7 120 59.2
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.0e-30 137.9 160 51.2
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 2.0e-27 127.9 87 70.1
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 5.0e-26 123.2 311 32.2
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.5e-25 121.7 68 89.7
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 5.6e-25 119.8 87 67.8
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 2.1e-24 117.9 69 78.3
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 6.6e-18 96.3 136 41.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-17 95.5 52 100.0
AUR62044062 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-17 95.5 52 100.0
AUR62044283 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-17 95.5 52 100.0
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.2e-08 63.2 41 68.3


User provided reference genes

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