Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026213 Chenopodium quinoa HOM05D000156 ORTHO05D009248 1.1e-91 340.1 186 100.0
Ah.03g134240 Amaranthus hybridus HOM05D000156 ORTHO05D009248 8.8e-38 161.0 243 51.0
EL10Ac6g13340 Beta vulgaris HOM05D000156 ORTHO05D009248 1.1e-32 144.1 259 43.2
Sc03g0003800 Simmondsia chinensis HOM05D000156 ORTHO05D009248 4.1e-19 99.0 168 43.5
Sopen02g028080 Solanum pennellii HOM05D000156 ORTHO05D009248 1.6e-18 97.1 136 47.8
CAN.G890.21 Capsicum annuum HOM05D000156 ORTHO05D009248 3.5e-18 95.9 134 47.0
Peaxi162Scf00300g00014 Petunia axillaris HOM05D000156 ORTHO05D009248 5.9e-18 95.1 135 49.6
Solyc02g083285.2 Solanum lycopersicum HOM05D000156 ORTHO05D009248 5.9e-18 95.1 135 47.4
Nitab4.5_0007439g0010 Nicotiana tabacum HOM05D000156 ORTHO05D009248 1.3e-17 94.0 130 47.7
Nitab4.5_0001696g0130 Nicotiana tabacum HOM05D000156 ORTHO05D009248 3.9e-17 92.4 130 47.7
PGSC0003DMG400003665 Solanum tuberosum HOM05D000156 ORTHO05D009248 3.9e-17 92.4 135 45.9
Dinv40152 Davidia involucrata HOM05D000156 ORTHO05D009248 2.5e-16 89.7 137 44.5
FAN28G0078 Fragaria x ananassa HOM05D000156 ORTHO05D009248 2.8e-15 86.3 128 46.9
Hma1.2p1_0315F.1_g122670 Hydrangea macrophylla HOM05D000156 ORTHO05D009248 1.8e-14 83.6 142 45.8
Lj4A227T49 Lonicera japonica HOM05D000156 ORTHO05D009248 1.8e-14 83.6 145 42.1
Prupe.7G176100 Prunus persica HOM05D000156 ORTHO05D009248 2.3e-14 83.2 133 42.1
FvH4_1g10950 Fragaria vesca HOM05D000156 ORTHO05D009248 4.0e-14 82.4 141 39.7
FAN23G0345 Fragaria x ananassa HOM05D000156 ORTHO05D009248 8.9e-14 81.3 141 39.0
CANSAT25G0279 Cannabis sativa HOM05D000156 ORTHO05D009248 5.8e-13 78.6 123 43.1
FAN19G2519 Fragaria x ananassa HOM05D000156 ORTHO05D009248 5.8e-13 78.6 136 39.0
CANSAT25G2258 Cannabis sativa HOM05D000156 ORTHO05D009248 7.5e-13 78.2 123 42.3
ATR0661G479 Amborella trichopoda HOM05D000156 ORTHO05D009248 9.8e-13 77.8 51 76.5
Cc07_g11420 Coffea canephora HOM05D000156 ORTHO05D009248 9.8e-13 77.8 123 48.0
Thhalv10010850m.g Eutrema salsugineum HOM05D000156 ORTHO05D009248 1.7e-12 77.0 113 48.7
Manes.02G111100 Manihot esculenta HOM05D000156 ORTHO05D009248 1.7e-12 77.0 134 42.5
AL5G31820 Arabidopsis lyrata HOM05D000156 ORTHO05D009248 2.9e-12 76.3 113 47.8
Aa31sc1371G10 Aethionema arabicum HOM05D000156 ORTHO05D009248 3.7e-12 75.9 101 50.5
Lalb_Chr05g0229701 Lupinus albus HOM05D000156 ORTHO05D009248 3.7e-12 75.9 129 43.4
AT3G51380 Arabidopsis thaliana HOM05D000156 ORTHO05D009248 6.4e-12 75.1 113 46.9
Glyma.16G121000 Glycine max HOM05D000156 ORTHO05D009248 8.3e-12 74.7 126 44.4
THA.LOC104821347 Tarenaya hassleriana HOM05D000156 ORTHO05D009248 8.3e-12 74.7 61 72.1
BcaC06g33034 Brassica carinata HOM05D000156 ORTHO05D009248 1.1e-11 74.3 50 80.0
C07p46310 Brassica napus HOM05D000156 ORTHO05D009248 1.1e-11 74.3 50 80.0
BolC7t45149H Brassica oleracea HOM05D000156 ORTHO05D009248 1.1e-11 74.3 50 80.0
Os03g0134800 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D009248 1.1e-11 74.3 55 67.3
GSVIVG01002333001 Vitis vinifera HOM05D000156 ORTHO05D009248 1.1e-11 74.3 143 39.9
CARHR160980 Cardamine hirsuta HOM05D000156 ORTHO05D009248 1.4e-11 73.9 105 49.5
Migut.H02186 Erythranthe guttata HOM05D000156 ORTHO05D009248 1.4e-11 73.9 130 40.8
Lj4g0004150 Lotus japonicus HOM05D000156 ORTHO05D009248 1.4e-11 73.9 142 43.0
Cfa007038 Carpinus fangiana HOM05D030635 ORTHO05D009248 2.4e-11 73.2 195 36.9
Haze_03691 Corylus avellana HOM05D030635 ORTHO05D009248 2.4e-11 73.2 195 35.4
BcaC06g33033 Brassica carinata HOM05D000156 ORTHO05D009248 3.2e-11 72.8 79 57.0
Sp5g10840 Schrenkiella parvula HOM05D000156 ORTHO05D009248 3.2e-11 72.8 113 46.9
SGA_v2.0_scaffold2G00976 Striga asiatica HOM05D000156 ORTHO05D009248 3.2e-11 72.8 50 80.0
Thecc.01G010300 Theobroma cacao HOM05D000156 ORTHO05D009248 3.2e-11 72.8 138 41.3
Medtr8g074730 Medicago truncatula HOM05D000156 ORTHO05D009248 4.1e-11 72.4 139 41.0
Nitab4.5_0001561g0050 Nicotiana tabacum HOM05D000156 ORTHO05D009248 4.1e-11 72.4 117 42.7
TPR.G32019 Trifolium pratense HOM05D000156 ORTHO05D009248 4.1e-11 72.4 142 43.0
BcaB01g00521 Brassica carinata HOM05D000156 ORTHO05D009248 5.4e-11 72.0 113 46.0
BcaB01g00522 Brassica carinata HOM05D000156 ORTHO05D009248 5.4e-11 72.0 113 46.0
COL.COLO4_22507 Corchorus olitorius HOM05D000156 ORTHO05D009248 5.4e-11 72.0 115 41.7
CsaV3_3G000450 Cucumis sativus L. HOM05D000156 ORTHO05D009248 5.4e-11 72.0 60 66.7
Ciclev10027351m.g Citrus clementina HOM05D000156 ORTHO05D009248 7.0e-11 71.6 87 50.6
Sed0006563 Sechium edule HOM05D000156 ORTHO05D009248 7.0e-11 71.6 146 38.4
BcaNung06757 Brassica carinata HOM05D000156 ORTHO05D009248 9.2e-11 71.2 79 54.4
CiPaw.07G005900 Carya illinoinensis HOM05D000156 ORTHO05D009248 9.2e-11 71.2 51 74.5
CANSAT25G1738 Cannabis sativa HOM05D000156 ORTHO05D009248 2.7e-10 69.7 54 70.4
CANSAT25G3886 Cannabis sativa HOM05D000156 ORTHO05D009248 2.7e-10 69.7 52 71.2
Potri.005G106300 Populus trichocarpa HOM05D000156 ORTHO05D009248 2.7e-10 69.7 141 38.3
A09p44460 Brassica napus HOM05D000156 ORTHO05D009248 3.5e-10 69.3 48 77.1
BraA09t39904Z Brassica rapa HOM05D000156 ORTHO05D009248 3.5e-10 69.3 48 77.1
TWI09G0192 Tripterygium wilfordii HOM05D000156 ORTHO05D009248 4.6e-10 68.9 144 35.4
ClCG10G000420 Citrullus lanatus HOM05D000156 ORTHO05D009248 7.8e-10 68.2 68 57.4
Psat4g102960 Pisum sativum HOM05D000156 ORTHO05D009248 7.8e-10 68.2 145 39.3
Gorai.003G005000 Gossypium raimondii HOM05D000156 ORTHO05D009248 2.3e-09 66.6 137 35.8
PSO675G2994 Papaver somniferum HOM05D000156 ORTHO05D009248 2.3e-09 66.6 55 61.8
VMungo0251G1272 Vigna mungo HOM05D000156 ORTHO05D009248 3.0e-09 66.2 130 40.0
C08p26660 Brassica napus HOM05D000156 ORTHO05D009248 3.9e-09 65.9 45 77.8
BolC8t50280H Brassica oleracea HOM05D000156 ORTHO05D009248 3.9e-09 65.9 45 77.8
Gohir.D03G004700 Gossypium hirsutum HOM05D000156 ORTHO05D009248 3.9e-09 65.9 137 34.3
PSO541G3017 Papaver somniferum HOM05D000156 ORTHO05D009248 3.9e-09 65.9 55 60.0
SalBow3G3967 Salvia bowleyana HOM05D000156 ORTHO05D009248 3.9e-09 65.9 50 72.0
Phvul.003G267500 Phaseolus vulgaris HOM05D000156 ORTHO05D009248 5.0e-09 65.5 51 66.7
Solyc03g032243.1 Solanum lycopersicum HOM05D000156 ORTHO05D009248 8.6e-09 64.7 48 70.8
Gohir.A02G175100 Gossypium hirsutum HOM05D000156 ORTHO05D009248 1.5e-08 63.9 133 35.3
SalBow3G0932 Salvia bowleyana HOM05D000156 ORTHO05D009248 1.9e-08 63.5 128 37.5
Sopen06g018060 Solanum pennellii HOM05D000156 ORTHO05D005692 2.5e-08 63.2 58 56.9
arahy.Tifrunner.gnm1.ann1.9MU5QJ Arachis hypogaea HOM05D000156 ORTHO05D009248 4.3e-08 62.4 128 37.5
Duzib147G0223 Durio zibethinus HOM05D000156 ORTHO05D009248 4.3e-08 62.4 129 38.8
Eucgr.I02290 Eucalyptus grandis HOM05D000156 ORTHO05D009248 9.5e-08 61.2 50 66.0
PGR119G0801 Punica granatum HOM05D000156 ORTHO05D009248 9.5e-08 61.2 50 66.0
COL.COLO4_10814 Corchorus olitorius HOM05D000156 ORTHO05D002570 1.2e-07 60.8 50 66.0
QL02p027651 Quercus lobata HOM05D000156 ORTHO05D002570 1.6e-07 60.5 48 66.7
Duzib084G0741 Durio zibethinus HOM05D000156 ORTHO05D002570 2.1e-07 60.1 48 64.6
Gohir.D12G242300 Gossypium hirsutum HOM05D000156 ORTHO05D002570 2.1e-07 60.1 48 66.7
Gorai.008G259600 Gossypium raimondii HOM05D000156 ORTHO05D002570 2.1e-07 60.1 48 66.7
Rhsim08G0029900 Rhododendron simsii HOM05D000156 ORTHO05D009248 2.1e-07 60.1 146 35.6
PGSC0003DMG400019610 Solanum tuberosum HOM05D000156 ORTHO05D005692 2.8e-07 59.7 49 61.2
Aqoxy7G00008 Aquilegia oxysepala HOM05D000156 ORTHO05D002570 3.6e-07 59.3 49 61.2
MD01G1218100 Malus domestica HOM05D000156 ORTHO05D005692 3.6e-07 59.3 49 61.2
Sabra05G0087200 Salix brachista HOM05D000156 ORTHO05D009248 3.6e-07 59.3 142 35.9
Sabra11G0146200 Salix brachista HOM05D000156 ORTHO05D002570 3.6e-07 59.3 45 68.9
BcaC01g02398 Brassica carinata HOM05D000156 ORTHO05D005692 4.7e-07 58.9 49 61.2
C03p65700 Brassica napus HOM05D000156 ORTHO05D005692 4.7e-07 58.9 49 61.2
BolC3t18823H Brassica oleracea HOM05D000156 ORTHO05D005692 4.7e-07 58.9 49 61.2
Glyma.04G235400 Glycine max HOM05D000156 ORTHO05D005692 4.7e-07 58.9 49 61.2
Gohir.A12G241000 Gossypium hirsutum HOM05D000156 ORTHO05D002570 4.7e-07 58.9 48 64.6
Thecc.03G219100 Theobroma cacao HOM05D000156 ORTHO05D002570 6.2e-07 58.5 48 64.6
Aa31LG4G17670 Aethionema arabicum HOM05D000156 ORTHO05D005692 8.0e-07 58.2 49 61.2
A06p28140 Brassica napus HOM05D000156 ORTHO05D005692 8.0e-07 58.2 49 61.2
Eucgr.D01673 Eucalyptus grandis HOM05D000156 ORTHO05D002570 8.0e-07 58.2 45 66.7
Thhalv10010338m.g Eutrema salsugineum HOM05D000156 ORTHO05D005692 8.0e-07 58.2 49 61.2
Sp5g12820 Schrenkiella parvula HOM05D000156 ORTHO05D005692 8.0e-07 58.2 49 61.2
Glyma.12G189900 Glycine max HOM05D000156 ORTHO05D001290 1.1e-06 57.8 49 61.2
Sabra16G0302600 Salix brachista HOM05D000156 ORTHO05D002570 1.1e-06 57.8 48 60.4
unitig_8.g3565 Utricularia gibba HOM05D000544 ORTHO05D000479 1.1e-06 57.8 47 59.6
FAN13G0978 Fragaria x ananassa HOM05D000156 ORTHO05D002570 1.4e-06 57.4 45 64.4
Medtr8g017570 Medicago truncatula HOM05D000156 ORTHO05D001290 1.4e-06 57.4 53 50.9
Psat4g187560 Pisum sativum HOM05D000156 ORTHO05D001290 1.4e-06 57.4 53 50.9
TPR.G3205 Trifolium pratense HOM05D000156 ORTHO05D001290 1.4e-06 57.4 53 50.9
FvH4_5g10710 Fragaria vesca HOM05D000156 ORTHO05D002570 1.8e-06 57.0 45 64.4
FAN08G2933 Fragaria x ananassa HOM05D000156 ORTHO05D002570 1.8e-06 57.0 45 64.4
PSO832G2375 Papaver somniferum HOM05D000585 ORTHO05D003019 1.8e-06 57.0 82 47.6
RcHm_v2.0_Chr7g0187421 Rosa chinensis HOM05D000156 ORTHO05D002570 1.8e-06 57.0 45 64.4
SEGI_27869 Sequoiadendron giganteum HOM05D000156 ORTHO05D009248 1.8e-06 57.0 49 61.2
Solyc03g121760.3 Solanum lycopersicum HOM05D000156 ORTHO05D001290 1.8e-06 57.0 47 61.7
Sopen03g040570 Solanum pennellii HOM05D000156 ORTHO05D001290 1.8e-06 57.0 47 61.7
PGSC0003DMG400002492 Solanum tuberosum HOM05D000156 ORTHO05D001290 1.8e-06 57.0 47 61.7
AL5G29010 Arabidopsis lyrata HOM05D000156 ORTHO05D005692 3.1e-06 56.2 72 48.6
AT3G49260 Arabidopsis thaliana HOM05D000156 ORTHO05D005692 3.1e-06 56.2 72 48.6
A03p48270 Brassica napus HOM05D000156 ORTHO05D009248 3.1e-06 56.2 51 62.7
BraA03t13936Z Brassica rapa HOM05D000156 ORTHO05D009248 3.1e-06 56.2 51 62.7
Carub.0001s1725 Capsella rubella HOM05D000156 ORTHO05D001290 3.1e-06 56.2 58 51.7
CARHR158130 Cardamine hirsuta HOM05D000156 ORTHO05D005692 3.1e-06 56.2 72 48.6
ClCG00G004130 Citrullus lanatus HOM05D000156 ORTHO05D005692 3.1e-06 56.2 49 59.2
ClCG01G000410 Citrullus lanatus HOM05D000156 ORTHO05D005692 3.1e-06 56.2 49 59.2
ECA232G0233 Erigeron canadensis HOM05D000156 ORTHO05D009248 3.1e-06 56.2 68 48.5
HanXRQChr09g0276611 Helianthus annuus HOM05D000156 ORTHO05D001290 3.1e-06 56.2 47 63.8
PSO210G6900 Papaver somniferum HOM05D000585 ORTHO05D003019 3.1e-06 56.2 82 47.6
Potri.001G448100 Populus trichocarpa HOM05D000156 ORTHO05D002570 3.1e-06 56.2 45 64.4
SEGI_04724 Sequoiadendron giganteum HOM05D000156 ORTHO05D002570 3.1e-06 56.2 50 60.0
AL1G29770 Arabidopsis lyrata HOM05D000156 ORTHO05D001290 4.0e-06 55.8 58 50.0
CDE04G2717 Ceratophyllum demersum HOM05D000314 ORTHO05D002570 4.0e-06 55.8 49 59.2
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 4.0e-06 55.8 49 57.1
FvH4_7g29094 Fragaria vesca HOM05D000585 ORTHO05D001977 4.0e-06 55.8 82 51.2
FAN06G0295 Fragaria x ananassa HOM05D000585 ORTHO05D001977 4.0e-06 55.8 82 51.2
Manes.01G041900 Manihot esculenta HOM05D000156 ORTHO05D002570 4.0e-06 55.8 45 62.2
Prupe.5G131700 Prunus persica HOM05D000156 ORTHO05D002570 4.0e-06 55.8 45 62.2
HPP92_021081 Vanilla planifolia HOM05D000156 ORTHO05D002570 4.0e-06 55.8 49 61.2
Aa31LG11G1460 Aethionema arabicum HOM05D000585 ORTHO05D001977 5.2e-06 55.5 69 52.2
AT4G10640 Arabidopsis thaliana HOM05D000156 ORTHO05D002570 5.2e-06 55.5 61 52.5
PGR031G3745 Punica granatum HOM05D000156 ORTHO05D002570 5.2e-06 55.5 45 64.4
SMO117G0035 Selaginella moellendorffii HOM05D000156 ORTHO05D001290 5.2e-06 55.5 48 58.3
Atru.BG.187.p Acer truncatum HOM05D000156 ORTHO05D002570 6.8e-06 55.1 47 63.8
AT1G17480 Arabidopsis thaliana HOM05D000156 ORTHO05D001290 6.8e-06 55.1 58 50.0
EL10Ac5g12409 Beta vulgaris HOM05D000156 ORTHO05D002570 6.8e-06 55.1 49 59.2
CDE09G0239 Ceratophyllum demersum HOM05D000585 ORTHO05D001977 6.8e-06 55.1 55 61.8
CDE11G0085 Ceratophyllum demersum HOM05D000585 ORTHO05D001977 6.8e-06 55.1 55 61.8
AUR62001520 Chenopodium quinoa HOM05D000156 ORTHO05D001290 6.8e-06 55.1 49 57.1
AUR62009848 Chenopodium quinoa HOM05D000156 ORTHO05D001290 6.8e-06 55.1 49 57.1
FAN04G0612 Fragaria x ananassa HOM05D000156 ORTHO05D002570 6.8e-06 55.1 45 62.2
MD06G1121100 Malus domestica HOM05D000156 ORTHO05D002570 6.8e-06 55.1 45 62.2
MD14G1137700 Malus domestica HOM05D000156 ORTHO05D002570 6.8e-06 55.1 44 63.6
A06p13410 Brassica napus HOM05D000156 ORTHO05D001290 8.9e-06 54.7 58 50.0
BraA06t24493Z Brassica rapa HOM05D000156 ORTHO05D001290 8.9e-06 54.7 58 50.0
Thhalv10007911m.g Eutrema salsugineum HOM05D000156 ORTHO05D001290 8.9e-06 54.7 58 50.0
Lalb_Chr23g0271611 Lupinus albus HOM05D000156 ORTHO05D005692 8.9e-06 54.7 49 57.1
Peaxi162Scf00888g00511 Petunia axillaris HOM05D000156 ORTHO05D002570 8.9e-06 54.7 64 51.6
Sp1g15620 Schrenkiella parvula HOM05D000156 ORTHO05D001290 8.9e-06 54.7 58 50.0


User provided reference genes

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