Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 0.0e+00 1104.7 572 100.0
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 6.7e-262 907.1 541 89.5
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.4e-142 510.8 550 54.9
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 2.9e-116 423.3 552 48.6
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 3.6e-90 336.7 598 43.0
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 1.8e-57 228.0 577 32.8
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 4.9e-39 166.8 608 29.1
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 5.0e-23 113.6 163 37.4
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 1.4e-22 112.1 224 31.2
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 1.2e-21 109.0 131 42.0
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 3.6e-21 107.5 131 41.2
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 6.1e-21 106.7 129 41.9
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 1.4e-20 105.5 134 39.6
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.8e-20 105.1 220 31.8
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 6.7e-20 103.2 214 32.2
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 8.8e-20 102.8 404 26.7
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 1.1e-19 102.4 130 40.8
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 2.5e-19 101.3 217 31.3
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 1.7e-18 98.6 212 32.5
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.8e-18 97.8 221 30.3
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 4.8e-18 97.1 203 36.0
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 8.2e-18 96.3 167 34.7
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 1.1e-17 95.9 237 28.3
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.4e-17 95.5 596 23.7
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 1.4e-17 95.5 122 41.0
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 2.4e-17 94.7 143 37.8
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 6.9e-17 93.2 447 26.2
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 9.1e-17 92.8 123 41.5
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 2.6e-16 91.3 443 25.7
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 4.5e-16 90.5 129 39.5
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 4.5e-16 90.5 162 34.0
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.0e-15 89.4 141 34.8
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.0e-15 89.4 150 37.3
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.3e-15 89.0 593 22.4
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.9e-15 87.8 216 32.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 3.8e-15 87.4 186 32.3
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 3.8e-15 87.4 141 35.5
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 6.5e-15 86.7 194 30.9
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.5e-15 86.3 141 35.5
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.1e-14 85.9 630 23.2
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 1.4e-14 85.5 108 39.8
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 1.9e-14 85.1 599 23.7
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 4.2e-14 84.0 166 33.7
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 4.2e-14 84.0 136 37.5
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 4.2e-14 84.0 245 30.2
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 5.5e-14 83.6 114 40.4
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 5.5e-14 83.6 117 35.9
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 9.4e-14 82.8 166 33.7
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 1.6e-13 82.0 153 34.0
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 1.6e-13 82.0 132 34.8
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.6e-13 82.0 222 30.6
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 2.1e-13 81.6 172 32.6
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 2.7e-13 81.3 120 37.5
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 4.7e-13 80.5 188 31.4
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 6.1e-13 80.1 179 30.7
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 6.1e-13 80.1 127 37.0
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 1.8e-12 78.6 228 28.9
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.0e-12 77.8 141 34.0
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 3.0e-12 77.8 207 28.5
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 8.8e-12 76.3 219 29.7
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 1.1e-11 75.9 180 30.6
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.5e-11 75.5 121 38.8
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 1.5e-11 75.5 150 30.7
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 2.0e-11 75.1 193 32.1
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 2.6e-11 74.7 117 35.0
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 3.3e-11 74.3 604 23.8
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 7.4e-11 73.2 170 33.5
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.3e-10 72.4 196 28.6
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 2.2e-10 71.6 364 24.5
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 2.8e-10 71.2 122 34.4
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.1e-09 69.3 97 37.1
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.8e-09 68.6 118 35.6
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 1.8e-09 68.6 105 34.3
Ah.02g121090 Amaranthus hybridus HOM05D021336 ORTHO05D009536 2.4e-09 68.2 109 44.0
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 3.1e-09 67.8 327 23.9
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 1.6e-08 65.5 160 32.5
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 4.5e-08 63.9 623 22.6
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.9e-07 61.2 201 28.4
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 3.8e-07 60.8 89 39.3
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 6.5e-07 60.1 604 20.0
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 3.2e-06 57.8 161 28.0
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 5.5e-06 57.0 122 28.7


User provided reference genes

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