Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.8e-235 818.9 423 100.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.5e-205 716.8 395 94.2
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 6.2e-156 554.7 422 70.6
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.1e-147 527.3 418 68.9
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.2e-84 317.0 422 46.4
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.0e-82 310.5 428 45.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-81 308.1 386 48.7
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.9e-80 303.9 430 46.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-79 300.8 427 45.0
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 2.1e-79 300.4 434 44.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.8e-79 300.1 432 44.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.1e-78 298.1 424 46.7
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.1e-78 296.6 380 48.2
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.8e-78 295.4 380 48.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-77 293.9 380 47.9
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.6e-77 293.5 380 46.1
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.4e-77 292.7 421 45.8
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 7.5e-77 292.0 387 46.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 9.8e-77 291.6 377 46.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.3e-76 291.2 391 49.4
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.2e-76 290.4 389 47.8
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.9e-76 290.0 383 46.2
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.9e-76 289.3 449 43.2
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 6.4e-76 288.9 435 44.6
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.4e-76 288.9 391 46.3
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 8.3e-76 288.5 432 45.6
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.4e-75 287.7 328 52.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.4e-75 287.7 414 44.9
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-75 287.7 424 44.1
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.9e-75 287.3 377 49.1
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.4e-75 287.0 405 47.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 5.4e-75 285.8 383 44.6
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 5.4e-75 285.8 427 43.1
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 5.4e-75 285.8 406 43.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.4e-75 285.8 384 45.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-74 284.6 423 44.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.7e-74 283.5 372 48.4
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 4.6e-74 282.7 375 48.0
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 7.8e-74 282.0 375 46.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 7.8e-74 282.0 420 45.2
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 7.8e-74 282.0 434 42.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-73 281.2 378 48.7
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.7e-73 280.8 402 43.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.5e-72 277.7 362 47.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.9e-72 277.3 370 47.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.5e-72 276.9 375 44.8
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.2e-71 274.6 423 43.7
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.8e-71 273.5 411 42.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.6e-71 273.1 434 42.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.1e-70 271.6 375 44.8
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.4e-70 271.2 438 41.3
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.0e-70 269.6 418 41.4
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 8.9e-70 268.5 440 41.6
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.0e-69 267.3 382 43.7
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.4e-69 266.5 375 47.2
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.4e-69 266.2 412 41.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.4e-69 266.2 409 41.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 4.4e-69 266.2 391 43.2
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.8e-69 265.8 451 41.0
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.5e-69 265.4 381 45.4
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 7.5e-69 265.4 383 45.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 7.5e-69 265.4 380 45.8
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.5e-69 265.4 420 44.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 9.9e-69 265.0 377 43.5
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.9e-69 265.0 452 40.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.3e-68 264.6 452 40.7
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.3e-68 264.6 386 45.9
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-68 264.6 378 45.8
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.2e-68 263.8 458 40.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 6.4e-68 262.3 374 44.9
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 8.3e-68 261.9 373 43.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.4e-67 261.2 304 50.3
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 2.4e-67 260.4 338 50.3
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.2e-67 260.0 434 41.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 3.2e-67 260.0 408 42.4
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 5.4e-67 259.2 387 43.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 7.1e-67 258.8 370 41.9
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 7.1e-67 258.8 376 44.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-66 258.1 374 43.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-66 258.1 374 43.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.2e-66 258.1 374 43.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.2e-66 258.1 370 41.9
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.6e-66 257.7 419 41.1
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.6e-66 257.7 416 40.9
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.5e-66 256.5 376 43.1
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 3.5e-66 256.5 381 41.2
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 4.6e-66 256.1 374 44.4
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 7.8e-66 255.4 380 41.3
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.0e-65 255.0 380 41.3
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.0e-65 253.4 381 42.8
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.9e-65 253.1 446 41.0
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 8.6e-65 251.9 371 43.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.5e-64 250.4 370 41.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.5e-64 250.4 370 41.6
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.3e-64 250.0 335 46.6
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.6e-64 249.2 435 41.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 7.3e-64 248.8 381 42.8
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 9.5e-64 248.4 421 40.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 9.5e-64 248.4 376 43.4
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.2e-63 248.1 398 41.2
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-63 246.5 378 40.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 6.2e-63 245.7 390 41.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.1e-62 245.0 377 41.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.2e-62 242.7 429 37.3
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 8.9e-62 241.9 410 41.0
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.2e-61 241.5 405 38.3
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.6e-61 240.4 397 39.0
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 7.6e-61 238.8 398 38.9
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 9.9e-61 238.4 327 44.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.9e-60 236.9 369 42.5
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.4e-60 235.7 387 43.4
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.4e-59 234.6 389 42.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.4e-59 233.8 374 41.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.4e-59 233.8 357 42.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.2e-59 233.0 389 42.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.1e-59 232.3 416 37.0
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.2e-58 231.5 319 44.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 6.0e-58 229.2 385 40.0
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.1e-57 226.1 380 39.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-55 220.7 307 42.7
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-55 220.7 307 42.7
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.1e-55 220.7 307 42.7
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.7e-55 219.5 375 40.3
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.8e-53 212.6 362 37.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 9.9e-53 211.8 301 40.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.2e-52 210.7 234 53.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.9e-52 210.3 371 40.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 4.2e-51 206.5 342 39.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 9.3e-51 205.3 383 37.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.2e-50 204.9 306 42.2
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.5e-48 198.0 380 36.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.6e-48 196.1 331 39.6
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.2e-43 180.3 319 37.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.2e-43 180.3 300 36.7
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.0e-41 173.7 296 38.5
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 6.7e-41 172.6 342 36.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.8e-38 164.5 293 39.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.3e-38 162.9 229 45.9
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.9e-36 157.1 479 29.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.9e-36 157.1 479 29.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.4e-35 154.8 400 30.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.6e-32 142.9 180 43.3
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.8e-31 140.6 180 42.2
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-29 135.2 415 29.2
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.2e-28 131.0 442 29.0
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.8e-28 130.2 437 28.4
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.5e-27 126.3 266 34.6
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-26 125.2 286 31.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.3e-24 116.7 244 34.0
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-22 110.9 220 33.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.4e-19 101.7 294 29.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 2.5e-19 100.9 260 29.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 9.4e-19 99.0 249 29.7
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 2.7e-18 97.4 103 56.3
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.9e-17 93.6 111 42.3
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 4.8e-15 86.7 125 42.4
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-14 84.7 227 28.6
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.5e-13 80.1 76 57.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-08 65.5 61 57.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.5e-08 65.1 84 44.0
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.7e-07 60.5 79 39.2


User provided reference genes

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