Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.3e-28 128.3 68 100.0
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.3e-28 128.3 68 100.0
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.2e-26 121.7 66 92.4
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.8e-17 92.0 66 66.7
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 4.1e-17 90.9 66 68.2
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 5.3e-17 90.5 67 65.7
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 9.1e-17 89.7 66 69.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.0e-16 88.6 58 72.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.5e-16 87.8 62 66.1
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 3.5e-16 87.8 58 70.7
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 3.5e-16 87.8 66 65.2
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 5.9e-16 87.0 63 69.8
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.0e-15 86.3 62 67.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-15 86.3 58 72.4
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.3e-15 85.9 66 62.1
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.2e-15 85.1 66 63.6
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.2e-15 85.1 63 65.1
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.8e-15 84.3 66 65.2
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 5.0e-15 84.0 62 62.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 6.5e-15 83.6 63 66.7
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 8.5e-15 83.2 67 67.2
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.1e-14 82.8 66 60.6
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.1e-14 82.8 66 60.6
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 63 63.5
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 63 63.5
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 62 62.9
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.5e-14 82.4 63 61.9
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 63 63.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 63 63.5
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.5e-14 81.6 63 61.9
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.5e-14 81.6 62 64.5
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.2e-14 81.3 66 59.1
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 4.2e-14 80.9 62 62.9
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 4.2e-14 80.9 62 64.5
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.2e-14 80.9 66 60.6
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 9.4e-14 79.7 66 59.1
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 66 63.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 66 63.6
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.2e-13 79.3 62 61.3
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 63 61.9
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.2e-13 79.3 67 56.7
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.6e-13 79.0 60 63.3
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.6e-13 79.0 66 62.1
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.6e-13 79.0 62 61.3
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 2.1e-13 78.6 62 62.9
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.7e-13 78.2 66 62.1
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 2.7e-13 78.2 66 57.6
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 2.7e-13 78.2 66 60.6
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.7e-13 78.2 63 66.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 3.6e-13 77.8 62 58.1
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 3.6e-13 77.8 61 62.3
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.6e-13 77.8 62 59.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.7e-13 77.4 62 59.7
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.7e-13 77.4 66 59.1
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.1e-13 77.0 66 60.6
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 8.0e-13 76.6 62 59.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.0e-12 76.3 66 56.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.0e-12 76.3 57 64.9
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.0e-12 76.3 69 60.9
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.0e-12 76.3 62 59.7
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 58 58.6
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.8e-12 75.5 62 58.1
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 66 57.6
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 3.0e-12 74.7 66 54.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 4.0e-12 74.3 59 55.9
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 5.2e-12 73.9 62 58.1
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.2e-12 73.9 66 57.6
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 6.8e-12 73.6 62 56.5
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.8e-12 73.6 58 55.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 8.8e-12 73.2 66 53.0
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 8.8e-12 73.2 66 53.0
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 8.8e-12 73.2 66 59.1
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 8.8e-12 73.2 62 56.5
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.2e-11 72.8 62 54.8
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.2e-11 72.8 65 55.4
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 1.5e-11 72.4 59 59.3
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 1.5e-11 72.4 59 59.3
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.5e-11 72.4 58 58.6
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.5e-11 72.4 58 58.6
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.5e-11 72.4 62 56.5
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.0e-11 72.0 65 55.4
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.0e-11 72.0 65 55.4
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 2.0e-11 72.0 63 57.1
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.0e-11 72.0 50 70.0
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.6e-11 71.6 66 53.0
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.6e-11 71.6 62 58.1
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.6e-11 71.6 66 54.5
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 3.4e-11 71.2 61 54.1
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.4e-11 70.9 57 59.6
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.4e-11 70.9 65 55.4
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 5.7e-11 70.5 62 54.8
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 5.7e-11 70.5 62 54.8
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.5e-11 70.1 57 57.9
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.5e-11 70.1 62 53.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.5e-11 70.1 62 53.2
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 7.5e-11 70.1 63 55.6
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 7.5e-11 70.1 62 54.8
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 7.5e-11 70.1 62 54.8
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.3e-10 69.3 62 53.2
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.7e-10 68.9 62 51.6
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-10 68.9 62 53.2
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.2e-10 68.6 57 56.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 2.2e-10 68.6 63 52.4
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 53.2
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.8e-10 67.4 66 53.0
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 4.8e-10 67.4 62 51.6
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 6.3e-10 67.0 62 54.8
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 6.3e-10 67.0 62 51.6
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.3e-10 67.0 62 54.8
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.3e-10 67.0 62 54.8
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.3e-10 66.6 62 50.0
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 8.3e-10 66.6 62 51.6
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.1e-09 66.2 61 54.1
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 54 57.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-09 65.5 62 53.2
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.8e-09 65.5 62 53.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.8e-09 65.5 62 53.2
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 2.4e-09 65.1 62 53.2
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 4.1e-09 64.3 66 51.5
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 5.4e-09 63.9 57 56.1
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 5.4e-09 63.9 57 54.4
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 5.4e-09 63.9 62 50.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 5.4e-09 63.9 62 50.0
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.4e-09 63.9 62 48.4
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 7.0e-09 63.5 57 56.1
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 7.0e-09 63.5 57 56.1
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 9.1e-09 63.2 57 54.4
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 9.1e-09 63.2 55 54.5
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 9.1e-09 63.2 50 58.0
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.2e-08 62.8 57 54.4
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.2e-08 62.8 66 50.0
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.2e-08 62.8 50 58.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.2e-08 62.8 66 51.5
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.6e-08 62.4 57 54.4
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 2.0e-08 62.0 66 45.5
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 3.5e-08 61.2 61 45.9
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 3.5e-08 61.2 39 74.4
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 4.5e-08 60.8 66 48.5
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 5.9e-08 60.5 62 46.8
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.7e-07 58.9 66 48.5
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 1.7e-07 58.9 57 50.9
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.3e-07 58.5 54 51.9
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.3e-07 58.5 59 47.5
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.9e-07 58.2 58 48.3
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.9e-07 58.2 54 51.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.9e-07 58.2 54 51.9
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.9e-07 58.2 59 47.5
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 2.9e-07 58.2 66 48.5
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 5.0e-07 57.4 66 45.5
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 8.6e-07 56.6 62 50.0
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-06 56.2 62 45.2
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.9e-06 55.5 63 46.0
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 2.5e-06 55.1 57 50.9
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 2.5e-06 55.1 57 50.9
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 2.5e-06 55.1 57 50.9
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 2.5e-06 55.1 43 60.5
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 3.3e-06 54.7 57 52.6
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.5e-06 53.9 57 49.1
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.5e-06 53.9 57 49.1
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.5e-06 53.9 50 50.0
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 7.2e-06 53.5 43 60.5
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 9.5e-06 53.1 57 47.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.5e-06 53.1 56 44.6


User provided reference genes

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