Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.2e-189 664.1 359 100.0
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.8e-167 592.8 379 86.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.0e-103 379.4 377 60.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.5e-65 254.2 303 53.1
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 3.6e-64 249.6 376 47.9
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.4e-60 236.9 398 42.5
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.7e-58 230.7 397 43.1
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.3e-57 226.5 406 41.4
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.3e-57 226.1 401 41.4
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.6e-57 225.7 408 41.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.8e-56 223.4 401 42.9
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.8e-55 220.7 390 43.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.3e-55 219.2 396 41.9
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 5.3e-55 219.2 392 41.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.0e-54 217.2 402 40.3
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 7.6e-54 215.3 404 38.9
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.6e-54 215.3 304 46.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-53 214.5 397 42.1
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-53 214.5 389 41.6
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.1e-52 211.5 439 37.8
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.9e-52 210.7 402 40.8
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.4e-52 210.3 431 38.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.2e-51 208.0 393 39.7
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.2e-51 208.0 386 40.2
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.6e-51 207.6 393 40.2
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 2.7e-51 206.8 386 40.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.0e-51 205.7 421 37.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.3e-50 204.5 625 32.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.8e-50 204.1 392 38.8
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 2.3e-50 203.8 435 39.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.3e-50 203.8 285 53.3
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.3e-50 203.8 393 40.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.0e-50 203.4 409 38.6
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 3.9e-50 203.0 395 39.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.9e-49 200.7 388 39.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.6e-49 199.1 414 37.9
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 7.4e-49 198.7 387 39.3
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 9.6e-49 198.4 388 39.4
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 9.6e-49 198.4 387 40.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.3e-48 198.0 429 36.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.8e-48 196.8 405 37.0
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 6.2e-48 195.7 428 39.3
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.2e-48 195.7 401 37.4
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 6.9e-47 192.2 392 40.3
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.9e-47 192.2 382 39.3
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 9.0e-47 191.8 431 36.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.0e-46 190.7 393 39.4
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 2.6e-46 190.3 375 39.2
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.4e-46 189.9 437 36.6
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 7.6e-46 188.7 402 38.8
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 6.5e-45 185.7 202 53.0
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 8.4e-45 185.3 416 36.3
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.1e-44 184.9 412 34.5
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.9e-44 184.1 202 52.0
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.5e-44 183.7 412 36.2
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.5e-44 183.7 389 38.8
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 3.2e-44 183.3 394 39.1
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 5.5e-44 182.6 384 38.3
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.2e-43 181.4 431 36.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.5e-43 179.9 359 39.8
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.6e-43 179.5 429 34.7
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 6.0e-43 179.1 248 46.4
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.0e-42 178.3 235 47.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.3e-42 177.2 391 39.1
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.5e-41 174.5 410 35.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.5e-41 174.5 417 36.9
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 9.6e-41 171.8 396 35.9
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.3e-40 171.4 325 39.4
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.6e-40 171.0 377 36.1
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 4.8e-40 169.5 404 35.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 6.2e-40 169.1 432 35.2
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.1e-39 166.8 388 34.8
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.5e-38 164.5 415 34.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 5.8e-38 162.5 403 34.5
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 5.8e-38 162.5 367 37.3
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.8e-38 162.5 385 39.5
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 7.6e-38 162.2 381 34.9
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 2.2e-37 160.6 210 47.1
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.2e-37 160.6 370 35.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 5.0e-37 159.5 442 32.1
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.1e-36 158.3 394 34.5
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.5e-36 157.1 371 35.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.2e-36 156.8 206 51.5
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 3.2e-36 156.8 388 33.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.2e-36 156.4 216 46.3
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.3e-36 155.2 370 36.8
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.1e-35 154.1 361 36.6
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 4.6e-35 152.9 368 37.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 6.1e-35 152.5 602 28.2
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 6.1e-35 152.5 160 54.4
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.3e-34 151.4 381 36.7
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.0e-34 150.2 381 36.7
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 5.1e-34 149.4 309 40.1
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.7e-32 143.3 428 32.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.4e-31 141.4 378 31.5
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.3e-31 139.4 124 61.3
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-30 137.9 431 32.3
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 4.5e-30 136.3 377 36.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 4.5e-30 136.3 360 35.8
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.7e-29 134.4 506 27.9
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 5.0e-29 132.9 299 37.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.4e-28 131.3 225 39.1
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 5.7e-25 119.4 270 35.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 4.8e-24 116.3 169 43.8
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 4.1e-23 113.2 130 47.7
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.5e-22 111.3 128 45.3
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.9e-20 104.4 369 29.8
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-19 101.3 341 30.8
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.6e-19 101.3 200 34.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.4e-18 98.2 303 34.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.8e-18 97.8 350 30.3
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.9e-18 96.7 194 39.2
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.6e-17 94.0 100 48.0
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 3.1e-15 87.0 62 69.4
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.1e-15 86.7 96 47.9
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 2.0e-14 84.3 398 26.1
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 3.8e-13 80.1 85 47.1
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.5e-12 78.2 220 29.5
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.9e-12 77.8 145 36.6
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.6e-11 74.7 201 33.8
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.0e-10 72.0 208 31.2
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.4e-10 71.6 290 29.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 5.2e-10 69.7 253 29.6
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 7.4e-09 65.9 323 27.9
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.3e-08 65.1 57 52.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-08 64.3 72 51.4
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.2e-08 64.3 89 41.6
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 3.7e-08 63.5 66 48.5
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 8.2e-08 62.4 294 29.6
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-07 61.6 64 48.4
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 1.8e-07 61.2 64 46.9
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.4e-07 60.8 279 28.3
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 3.1e-07 60.5 64 46.9
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 9.1e-07 58.9 231 29.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.6e-06 58.2 127 30.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.6e-06 58.2 293 28.7
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-06 58.2 324 27.5
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 2.6e-06 57.4 55 52.7
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 5.9e-06 56.2 39 64.1


User provided reference genes

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