Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.3e-113 411.8 216 100.0
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.3e-88 330.1 176 97.7
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 6.4e-72 274.6 176 81.2
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 7.5e-65 251.1 176 75.0
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.3e-45 187.2 201 54.7
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 7.3e-44 181.4 173 56.6
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.8e-43 179.5 179 54.7
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 3.6e-43 179.1 174 56.9
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 8.1e-43 177.9 173 56.6
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.1e-42 177.6 173 56.1
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.4e-42 177.2 173 56.6
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 5.2e-42 175.3 172 57.0
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.6e-41 172.9 176 55.1
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 2.9e-40 169.5 179 52.5
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 3.8e-40 169.1 171 55.0
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 6.4e-40 168.3 182 52.2
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 6.4e-40 168.3 180 52.8
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.1e-39 167.5 184 53.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.1e-39 167.5 173 53.2
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.9e-39 166.8 180 52.2
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 4.2e-39 165.6 183 51.9
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 7.1e-39 164.9 172 53.5
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.6e-38 163.7 173 53.8
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.1e-38 163.3 172 52.9
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 2.7e-38 162.9 165 53.3
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 3.5e-38 162.5 168 51.8
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 3.5e-38 162.5 173 53.8
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.0e-38 161.8 173 53.2
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.0e-37 161.0 181 50.3
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.3e-37 160.6 177 50.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.3e-37 159.8 173 52.6
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.3e-37 159.8 176 51.7
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 3.0e-37 159.5 173 51.4
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.0e-37 159.5 173 50.9
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 3.9e-37 159.1 166 54.2
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 6.6e-37 158.3 173 53.2
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 8.7e-37 157.9 176 51.1
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.7e-37 157.9 176 51.1
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.5e-36 157.1 178 52.2
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.5e-36 157.1 173 51.4
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.9e-36 156.8 180 50.0
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.9e-36 156.8 176 50.0
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.9e-36 156.8 201 45.8
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.9e-36 156.8 172 52.9
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.5e-36 156.4 173 52.6
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 4.3e-36 155.6 185 50.8
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 4.3e-36 155.6 168 52.4
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.1e-35 153.3 172 52.3
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.2e-35 151.8 175 48.0
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 1.4e-34 150.6 170 50.0
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.0e-33 146.7 175 46.9
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 4.5e-33 145.6 177 46.3
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 4.5e-33 145.6 172 48.8
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 5.8e-33 145.2 173 50.3
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 5.8e-33 145.2 170 50.6
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 9.9e-33 144.4 172 47.1
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 9.9e-33 144.4 169 45.6
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.7e-32 143.7 174 50.0
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.7e-32 143.7 172 47.7
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.7e-32 143.7 170 48.2
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 6.4e-32 141.7 173 47.4
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 6.4e-32 141.7 176 46.6
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 8.4e-32 141.4 173 46.8
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-31 140.6 175 44.6
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 3.2e-31 139.4 172 48.3
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 4.2e-31 139.0 176 45.5
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 5.4e-31 138.7 176 47.7
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 5.4e-31 138.7 173 48.0
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 2.1e-30 136.7 173 45.1
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.7e-30 136.3 171 48.0
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.7e-30 136.3 176 48.3
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 3.5e-30 136.0 173 46.8
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 3.5e-30 136.0 180 47.8
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.6e-30 135.6 171 47.4
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.0e-29 134.4 171 45.0
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.3e-29 134.0 173 46.2
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.9e-29 132.5 177 44.6
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 3.9e-29 132.5 177 44.6
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 8.7e-29 131.3 169 45.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 8.7e-29 131.3 169 45.0
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 8.7e-29 131.3 167 47.9
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 1.1e-28 131.0 169 45.0
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 1.1e-28 131.0 169 45.0
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.1e-28 131.0 175 47.4
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 3.3e-28 129.4 181 47.0
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 4.3e-28 129.0 175 42.9
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 7.4e-28 128.3 169 44.4
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 9.6e-28 127.9 176 45.5
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 1.3e-27 127.5 175 47.4
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.3e-27 127.5 177 42.9
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 1.6e-27 127.1 169 43.8
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.8e-27 126.3 173 44.5
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.8e-27 126.3 175 45.7
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 2.8e-27 126.3 174 44.8
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.8e-27 126.3 175 44.0
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 4.8e-27 125.6 171 43.9
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 6.2e-27 125.2 167 44.9
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.1e-26 124.4 168 44.0
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.1e-26 124.4 117 52.1
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.1e-26 124.4 173 45.1
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.1e-26 124.4 172 44.2
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.8e-26 123.6 175 45.7
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.4e-26 123.2 177 44.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.1e-26 122.9 175 45.1
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 5.3e-26 122.1 170 44.1
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 5.3e-26 122.1 170 44.1
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 5.3e-26 122.1 170 44.1
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.2e-25 120.9 173 44.5
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.5e-25 120.6 179 44.1
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 3.4e-25 119.4 170 44.7
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 4.5e-25 119.0 166 44.0
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 9.9e-25 117.9 171 43.3
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.3e-24 117.5 169 42.6
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.3e-24 117.5 169 42.6
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.3e-24 117.5 175 46.9
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.3e-24 117.5 175 45.1
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.7e-24 117.1 109 53.2
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.9e-24 116.3 165 43.0
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.9e-24 116.3 165 43.0
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.4e-23 114.0 172 41.9
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 4.2e-23 112.5 170 41.2
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.2e-23 112.5 108 50.9
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 3.9e-21 105.9 174 41.4
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 9.6e-20 101.3 174 40.8
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 3.7e-19 99.4 177 41.2
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 8.1e-19 98.2 114 50.0
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 8.1e-19 98.2 204 37.7
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.3e-16 90.9 172 41.3
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.4e-15 87.4 178 37.1
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 2.1e-06 57.0 93 34.4
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 4.6e-06 55.8 176 27.8


User provided reference genes

Program Settings