Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.6e-223 778.5 415 100.0
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.5e-181 639.0 352 96.6
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.6e-154 549.3 413 74.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 9.4e-149 530.8 416 71.9
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.0e-146 523.1 419 72.3
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.7e-129 466.8 415 62.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.4e-128 463.0 415 62.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 7.0e-128 461.5 411 62.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.7e-127 459.5 425 62.6
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 7.8e-127 458.0 413 64.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.0e-126 457.6 429 62.0
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.7e-126 456.8 415 63.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.7e-126 456.8 415 61.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.9e-125 453.4 420 63.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.5e-125 453.0 409 63.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.2e-124 450.7 408 64.0
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.2e-124 450.7 394 65.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.6e-124 450.3 418 60.8
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.1e-124 449.9 407 63.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 3.6e-124 449.1 422 64.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 4.7e-124 448.7 416 61.8
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.1e-124 448.0 428 61.9
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 8.1e-124 448.0 434 61.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 8.1e-124 448.0 406 63.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-123 447.6 427 61.8
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.4e-123 447.2 414 62.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.4e-123 447.2 409 62.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.4e-123 447.2 427 62.1
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.1e-123 446.0 427 61.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 4.0e-123 445.7 414 61.6
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 8.9e-123 444.5 417 61.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.4e-122 442.2 414 62.3
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 7.5e-122 441.4 405 62.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.4e-120 437.2 420 61.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.4e-120 436.4 408 62.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.2e-120 436.0 422 58.5
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.1e-120 435.6 415 61.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 4.1e-120 435.6 411 61.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 5.4e-120 435.3 406 61.3
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.2e-120 434.5 420 59.3
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.0e-119 431.8 408 61.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 6.0e-119 431.8 425 60.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.7e-118 430.3 413 60.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.1e-117 427.6 404 61.6
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.9e-117 426.8 420 59.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 5.6e-117 425.2 415 60.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.1e-116 423.3 402 61.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.1e-116 423.3 413 59.8
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.7e-116 422.2 412 59.5
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 8.1e-116 421.4 405 60.5
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 8.1e-116 421.4 411 60.6
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.3e-115 419.9 366 65.3
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 4.0e-115 419.1 410 58.5
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.0e-115 419.1 419 60.6
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.2e-115 418.7 415 60.7
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.8e-115 418.3 410 59.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.5e-114 417.2 445 56.9
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 5.8e-114 415.2 474 54.9
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.4e-113 411.8 405 58.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 6.4e-113 411.8 449 56.1
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-112 410.6 424 58.7
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.1e-112 409.1 369 63.7
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.6e-111 405.6 428 56.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.5e-109 399.8 441 57.1
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.6e-109 398.7 427 57.4
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.6e-109 398.7 399 58.1
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.6e-108 397.1 402 59.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.1e-108 396.7 368 62.0
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 3.6e-108 396.0 424 56.1
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 5.2e-107 392.1 416 58.4
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.2e-106 391.0 398 58.8
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.5e-106 390.6 418 56.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.0e-106 390.2 398 57.0
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.4e-106 389.4 420 56.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 7.6e-106 388.3 400 57.5
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.7e-105 387.1 418 56.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 6.4e-105 385.2 494 51.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 5.4e-104 382.1 404 59.9
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 7.1e-104 381.7 410 55.4
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.1e-103 380.2 411 56.2
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 2.3e-102 376.7 432 53.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 6.6e-102 375.2 396 57.8
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.6e-102 375.2 413 55.7
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 3.3e-101 372.9 412 56.1
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.3e-101 371.7 402 57.7
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.6e-101 371.3 273 70.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.1e-100 370.2 371 59.0
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.4e-99 366.7 421 54.2
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-98 364.4 390 55.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.5e-98 364.0 411 56.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 5.8e-98 362.1 394 56.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 9.9e-98 361.3 387 55.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.7e-97 360.5 413 54.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.2e-95 354.4 411 53.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.7e-95 353.2 381 55.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.7e-95 353.2 381 55.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-95 353.2 411 53.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-93 347.4 404 53.5
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 7.4e-93 345.1 418 51.7
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 3.1e-91 339.7 424 50.9
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 4.9e-89 332.4 321 62.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.2e-88 329.7 396 53.5
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.3e-86 323.6 382 52.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.3e-86 323.6 433 48.0
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.5e-85 320.1 297 64.0
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 9.6e-85 318.2 328 61.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.1e-84 317.0 414 49.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.1e-83 314.7 408 49.8
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-83 314.3 422 52.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.0e-83 312.8 411 51.8
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.3e-83 312.4 298 62.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.1e-80 304.7 300 58.7
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 2.3e-78 297.0 257 65.4
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.9e-78 296.2 388 50.3
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.4e-67 260.4 333 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 4.1e-67 259.6 424 43.4
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 5.3e-67 259.2 244 61.1
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 8.5e-65 251.9 265 58.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.5e-64 250.4 259 59.1
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.1e-63 245.7 260 59.2
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.8e-62 244.2 268 56.0
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 3.3e-61 240.0 256 59.0
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 2.2e-57 227.3 195 62.1
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 8.5e-57 225.3 436 41.3
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.5e-56 223.8 262 55.0
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.2e-56 223.4 260 55.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.2e-56 222.2 262 54.6
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.8e-54 217.6 243 53.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 5.9e-50 202.6 256 52.7
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-46 191.8 136 68.4
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.3e-46 190.7 451 35.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 7.5e-45 185.7 451 36.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 9.7e-45 185.3 258 51.2
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-44 184.5 135 67.4
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 6.3e-44 182.6 401 40.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-43 181.4 182 57.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.4e-35 154.8 469 32.0
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.4e-35 154.1 122 68.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 7.0e-35 152.5 139 57.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.0e-34 151.0 158 56.3
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 7.2e-32 142.5 176 53.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.4e-30 138.3 190 47.4
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 3.4e-29 133.7 150 49.3
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-21 107.5 131 50.4
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.4e-11 75.1 229 35.4
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.9e-11 74.7 146 37.7
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 1.5e-08 65.1 36 86.1
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 4.7e-07 60.1 38 68.4
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.4e-06 58.5 53 52.8
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 4.0e-06 57.0 34 79.4
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.0e-06 57.0 131 34.4


User provided reference genes

Program Settings