Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.3e-254 880.6 451 100.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.3e-240 834.3 457 93.2
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.1e-177 627.1 428 74.1
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 8.8e-116 421.4 454 52.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 5.7e-115 418.7 444 54.5
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 8.2e-114 414.8 458 51.7
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.1e-113 414.5 452 51.3
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 2.4e-113 413.3 450 52.0
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.9e-111 406.4 422 53.3
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.0e-111 405.6 453 51.4
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 6.5e-111 405.2 462 50.9
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 3.6e-109 399.4 443 52.1
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 6.1e-109 398.7 451 48.8
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 6.1e-109 398.7 454 50.9
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 6.1e-109 398.7 417 53.2
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.4e-108 397.5 446 51.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 3.9e-108 396.0 449 49.0
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 6.7e-108 395.2 455 51.2
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 8.8e-108 394.8 458 50.9
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 3.3e-107 392.9 454 50.2
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 5.7e-107 392.1 442 51.4
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 7.4e-107 391.7 461 49.0
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 7.4e-107 391.7 404 51.7
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 1.3e-106 391.0 466 49.4
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 4.8e-106 389.0 456 50.7
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.1e-105 387.9 455 49.7
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 2.4e-105 386.7 416 51.0
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 5.3e-105 385.6 460 50.7
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 7.0e-105 385.2 457 49.9
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.0e-104 383.6 413 51.3
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.6e-104 383.3 449 51.7
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.5e-104 382.9 413 50.6
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 3.5e-104 382.9 448 51.8
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 5.9e-104 382.1 450 50.4
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.0e-103 381.3 452 50.2
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.9e-103 379.8 449 51.7
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 2.9e-103 379.8 449 51.7
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 2.9e-103 379.8 445 50.8
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.8e-103 379.4 446 49.3
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.1e-102 377.9 524 43.9
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 4.2e-102 375.9 461 51.2
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 5.5e-102 375.6 501 46.1
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.1e-101 373.6 411 51.3
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 2.7e-101 373.2 406 50.2
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 8.0e-101 371.7 462 49.6
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 8.0e-101 371.7 455 48.8
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 1.0e-100 371.3 451 47.9
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.0e-99 367.1 416 50.0
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.6e-99 366.7 385 51.9
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.6e-99 366.7 398 51.5
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 4.4e-99 365.9 413 49.6
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.7e-98 364.0 444 48.4
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 2.4e-97 360.1 420 48.8
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 4.1e-97 359.4 406 48.5
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 7.0e-97 358.6 458 47.4
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 2.0e-96 357.1 452 47.6
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.0e-95 354.8 457 46.2
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.3e-95 354.4 417 49.2
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.9e-95 353.2 438 47.9
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.8e-95 352.8 406 48.0
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 5.0e-95 352.4 417 48.9
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.5e-95 352.1 443 48.3
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 6.5e-95 352.1 458 47.4
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.1e-94 351.3 443 48.3
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.9e-94 350.5 450 47.8
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 9.4e-94 348.2 395 50.9
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.2e-93 347.8 325 55.4
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 2.7e-93 346.7 417 48.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.7e-93 345.9 478 46.0
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 8.0e-93 345.1 441 46.0
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 1.4e-92 344.4 437 47.6
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 4.0e-92 342.8 338 51.8
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 9.8e-91 338.2 429 46.4
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.2e-90 337.0 420 47.4
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 6.3e-90 335.5 349 53.3
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.1e-89 334.7 392 50.0
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.1e-89 334.7 436 46.6
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.4e-89 334.3 395 48.4
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.4e-89 333.6 453 46.1
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 9.1e-89 331.6 394 48.2
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 9.1e-89 331.6 397 47.9
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 9.1e-89 331.6 397 48.1
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.2e-88 331.3 397 47.9
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 2.7e-88 330.1 393 47.8
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 2.7e-88 330.1 393 47.8
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 7.7e-88 328.6 395 48.1
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.3e-87 327.8 389 49.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.7e-87 327.4 395 48.1
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 5.0e-87 325.9 390 49.0
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.1e-86 324.7 444 45.5
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.2e-85 321.2 402 47.0
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 3.6e-85 319.7 428 43.9
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 6.1e-85 318.9 450 45.3
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.0e-84 318.2 346 50.0
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 1.8e-84 317.4 425 44.0
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.8e-84 317.4 379 48.8
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 2.0e-83 313.9 505 39.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 5.7e-83 312.4 402 45.3
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 7.5e-83 312.0 387 47.8
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.1e-81 308.1 381 48.0
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.4e-81 307.0 360 48.6
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.2e-80 304.7 492 41.3
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 2.0e-80 303.9 378 47.1
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 2.7e-80 303.5 416 45.4
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 7.8e-80 302.0 324 51.5
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.4e-76 291.2 329 50.5
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 3.1e-76 290.0 381 46.2
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.9e-76 288.5 306 49.0
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 3.4e-75 286.6 307 51.8
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 3.4e-75 286.6 307 51.8
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 4.4e-75 286.2 386 43.3
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 5.8e-75 285.8 370 46.5
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 5.8e-75 285.8 375 46.1
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.8e-75 285.8 360 46.7
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 7.5e-75 285.4 360 46.4
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.3e-74 284.6 384 45.8
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 2.4e-73 280.4 372 45.7
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 7.0e-73 278.9 373 43.7
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 1.2e-72 278.1 298 49.0
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 2.7e-72 276.9 442 41.9
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.9e-70 270.8 384 45.6
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.3e-70 268.9 279 55.2
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.4e-68 264.6 291 47.1
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.4e-67 259.6 403 41.4
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.0e-65 252.3 223 60.1
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.1e-64 250.8 258 50.8
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.6e-64 249.6 382 41.1
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 7.8e-64 248.8 449 39.6
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 8.6e-63 245.4 313 44.4
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.2e-60 236.1 213 55.4
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 8.3e-58 228.8 209 55.0
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 7.8e-56 222.2 291 47.1
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.0e-55 221.9 206 53.9
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 2.5e-54 217.2 299 44.1
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 3.6e-53 213.4 316 41.8
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 2.0e-51 207.6 183 59.0
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.3e-46 190.3 279 42.3
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 4.8e-45 186.4 165 56.4
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.4e-36 158.3 379 33.5
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.7e-34 151.4 239 43.9
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 3.3e-30 137.1 247 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 6.5e-26 122.9 216 34.7
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.1e-24 117.9 456 29.2
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 7.4e-22 109.4 152 37.5
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 1.4e-20 105.1 175 41.1
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.3e-18 98.6 321 29.6
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.8e-13 80.9 118 37.3
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 5.3e-12 76.6 73 53.4
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.4e-06 56.2 69 43.5
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 7.4e-06 56.2 75 38.7


User provided reference genes

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