Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 8.0e-138 493.8 259 100.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.2e-128 463.4 259 95.0
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 7.6e-72 274.6 262 60.7
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 6.7e-68 261.5 258 58.1
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.1e-65 254.2 274 54.0
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.9e-62 243.4 248 57.3
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.9e-62 243.4 254 54.3
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.2e-61 240.7 196 63.3
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 6.0e-61 238.4 260 52.7
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 7.4e-59 231.5 203 59.1
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.3e-58 230.7 245 54.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.8e-57 226.9 223 55.6
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.0e-56 223.4 210 58.6
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.7e-55 220.3 262 50.0
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.4e-54 217.2 248 52.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 1.9e-54 216.9 248 52.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.5e-54 216.5 259 47.9
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 3.2e-54 216.1 251 53.4
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 4.2e-54 215.7 240 52.1
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.2e-53 214.2 240 52.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 2.7e-53 213.0 260 50.8
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.0e-52 211.1 262 50.0
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 5.1e-52 208.8 257 47.9
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 6.7e-52 208.4 253 49.4
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 8.8e-52 208.0 261 47.5
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 5.7e-51 205.3 260 47.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 7.4e-51 204.9 259 47.5
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 9.7e-51 204.5 217 52.1
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 9.7e-51 204.5 216 52.3
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 9.7e-51 204.5 252 49.2
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.3e-50 204.1 265 48.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.3e-50 204.1 258 48.4
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.3e-50 204.1 258 48.4
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 2.2e-50 203.4 240 49.6
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 4.8e-50 202.2 253 47.0
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 8.2e-50 201.4 224 51.3
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.4e-49 200.7 232 48.3
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.4e-49 200.7 262 47.3
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.8e-49 200.3 254 49.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.8e-49 200.3 247 49.8
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.3e-49 198.7 203 53.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 5.3e-49 198.7 257 45.5
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 5.3e-49 198.7 209 53.6
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 5.3e-49 198.7 248 47.6
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 6.9e-49 198.4 197 53.8
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 6.9e-49 198.4 260 47.7
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 9.1e-49 198.0 216 52.8
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 9.1e-49 198.0 262 46.2
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.2e-48 197.6 216 52.3
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.2e-48 197.6 216 52.3
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.2e-48 197.6 210 52.9
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.0e-48 196.8 175 64.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 2.6e-48 196.4 216 51.4
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 2.6e-48 196.4 260 47.7
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 3.4e-48 196.1 208 52.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 3.4e-48 196.1 226 50.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 4.5e-48 195.7 194 53.6
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 4.5e-48 195.7 216 51.4
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.7e-47 193.7 261 44.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.9e-47 193.0 194 54.1
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.9e-47 193.0 216 50.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 3.8e-47 192.6 199 54.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 5.0e-47 192.2 217 49.8
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 5.0e-47 192.2 261 44.4
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 8.5e-47 191.4 252 47.2
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.1e-46 191.0 194 54.1
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-46 190.7 200 52.5
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 7.2e-46 188.3 261 44.8
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 7.2e-46 188.3 254 44.9
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-45 187.2 200 52.5
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 7.9e-45 184.9 254 47.2
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.8e-44 183.7 259 44.8
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.8e-44 183.7 156 64.1
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 8.8e-44 181.4 222 48.2
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 8.8e-44 181.4 257 45.1
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.0e-43 180.3 210 51.4
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.3e-43 179.5 253 44.3
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 4.8e-42 175.6 221 48.9
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.1e-41 174.5 247 44.5
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.1e-41 174.5 247 44.5
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.1e-41 172.6 261 42.5
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.5e-40 170.6 226 46.5
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.0e-40 170.2 217 47.5
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.3e-39 167.5 269 42.0
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 3.8e-39 166.0 226 46.5
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.5e-39 165.2 218 46.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 8.5e-39 164.9 255 43.5
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-38 163.7 173 52.6
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 2.5e-38 163.3 226 45.1
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.2e-38 162.9 250 43.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 3.2e-38 162.9 234 44.4
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 5.5e-38 162.2 255 42.7
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.2e-37 161.0 255 42.0
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.2e-37 161.0 254 41.7
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.7e-37 159.8 206 47.6
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.7e-37 159.8 253 43.1
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 6.1e-37 158.7 258 38.4
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 3.0e-36 156.4 250 42.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 6.7e-36 155.2 254 41.7
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 6.7e-36 155.2 216 44.4
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.0e-35 153.7 208 44.2
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 5.7e-35 152.1 260 40.0
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.3e-34 151.0 211 46.0
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 210 45.7
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 4.8e-34 149.1 270 39.6
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-33 147.5 228 42.5
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.4e-33 146.7 197 45.2
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.5e-32 142.9 247 39.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 4.5e-32 142.5 248 39.1
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.2e-31 140.2 264 37.9
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.9e-31 139.8 196 43.9
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.5e-30 136.7 250 39.2
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 2.5e-30 136.7 144 52.8
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-28 130.6 129 51.9
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 4.0e-28 129.4 147 48.3
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.1e-25 121.3 238 36.1
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.8e-25 120.6 204 40.2
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 3.1e-25 119.8 189 41.3
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.2e-24 117.9 150 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 3.8e-23 112.8 224 30.4
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 3.2e-22 109.8 117 53.0
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.7e-21 106.7 208 31.7
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.6e-21 106.3 195 34.9
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.4e-19 99.4 180 35.6
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 7.5e-19 98.6 145 41.4
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.2e-18 97.1 212 29.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.2e-18 97.1 208 31.2
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.1e-17 94.7 72 68.1
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 3.1e-17 93.2 105 53.3
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.3e-15 87.8 82 53.7
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 3.8e-15 86.3 111 47.7
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.5e-14 83.6 79 51.9
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.5e-14 83.6 216 26.9
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.7e-13 79.3 88 54.5
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.2e-11 74.7 208 27.4
Nn2g13608 Nelumbo nucifera HOM05D005866 ORTHO05D007078 5.7e-11 72.4 65 63.1
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.4e-09 65.9 194 23.7
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 8.6e-07 58.5 49 61.2


User provided reference genes

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