Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025751 Chenopodium quinoa HOM05D001145 ORTHO05D008176 9.5e-65 250.0 122 100.0
AUR62024771 Chenopodium quinoa HOM05D001145 ORTHO05D008176 3.5e-43 178.3 88 92.0
AUR62032447 Chenopodium quinoa HOM05D001145 ORTHO05D008176 3.5e-43 178.3 88 92.0
EL10Ac2g02451 Beta vulgaris HOM05D001145 ORTHO05D008176 3.0e-42 175.3 88 88.6
Ah.12g060390 Amaranthus hybridus HOM05D001145 ORTHO05D008176 1.2e-40 169.9 88 85.2
Actinidia06455 Actinidia chinensis HOM05D001145 ORTHO05D008176 2.1e-40 169.1 88 84.1
arahy.Tifrunner.gnm1.ann1.VKSA8D Arachis hypogaea HOM05D001145 ORTHO05D008176 2.1e-40 169.1 88 86.4
arahy.Tifrunner.gnm1.ann1.ZP8Y56 Arachis hypogaea HOM05D001145 ORTHO05D008176 2.1e-40 169.1 88 86.4
Ca_15787_v3 Cicer arietinum L. HOM05D001145 ORTHO05D008176 4.7e-40 167.9 88 84.1
Eucgr.C04031 Eucalyptus grandis HOM05D001145 ORTHO05D008176 8.1e-40 167.2 88 84.1
Phvul.009G086000 Phaseolus vulgaris HOM05D001145 ORTHO05D008176 1.4e-39 166.4 88 84.1
CSS0018677 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 1.8e-39 166.0 88 83.0
CSS0043219 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 1.8e-39 166.0 88 83.0
COL.COLO4_18970 Corchorus olitorius HOM05D001145 ORTHO05D008176 2.3e-39 165.6 88 83.0
Dinv16415 Davidia involucrata HOM05D001145 ORTHO05D008176 2.3e-39 165.6 88 80.7
Glyma.04G059800 Glycine max HOM05D001145 ORTHO05D008176 2.3e-39 165.6 88 83.0
TPR.G1896 Trifolium pratense HOM05D001145 ORTHO05D008176 2.3e-39 165.6 88 81.8
Manes.16G132300 Manihot esculenta HOM05D001145 ORTHO05D008176 3.1e-39 165.2 88 84.1
Medtr3g105820 Medicago truncatula HOM05D001145 ORTHO05D008176 3.1e-39 165.2 88 83.0
Hund02973 Selenicereus undatus HOM05D001145 ORTHO05D008176 3.1e-39 165.2 88 83.0
vmacro11276 Vaccinium macrocarpon HOM05D001145 ORTHO05D008176 3.1e-39 165.2 88 83.0
Lalb_Chr08g0244481 Lupinus albus HOM05D001145 ORTHO05D008176 4.0e-39 164.9 88 84.1
Sc06g0000320 Simmondsia chinensis HOM05D001145 ORTHO05D008176 4.0e-39 164.9 88 81.8
Actinidia22279 Actinidia chinensis HOM05D001145 ORTHO05D008176 5.2e-39 164.5 88 80.7
CiPaw.08G004400 Carya illinoinensis HOM05D001145 ORTHO05D008176 5.2e-39 164.5 88 83.0
CSS0007167 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 6.8e-39 164.1 88 80.7
CSS0034347 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 6.8e-39 164.1 88 80.7
Rhsim02G0217800 Rhododendron simsii HOM05D001145 ORTHO05D008176 1.2e-38 163.3 88 83.0
Rhsim02G0217900 Rhododendron simsii HOM05D001145 ORTHO05D008176 1.2e-38 163.3 88 83.0
CiPaw.07G232800 Carya illinoinensis HOM05D001145 ORTHO05D008176 1.5e-38 162.9 88 81.8
PGR044G1085 Punica granatum HOM05D001145 ORTHO05D008176 1.5e-38 162.9 88 80.7
QL02p018077 Quercus lobata HOM05D001145 ORTHO05D008176 1.5e-38 162.9 88 80.7
TWI34G0371 Tripterygium wilfordii HOM05D001145 ORTHO05D008176 1.5e-38 162.9 88 80.7
Thecc.09G013700 Theobroma cacao HOM05D001145 ORTHO05D008176 2.0e-38 162.5 88 80.7
GSVIVG01036007001 Vitis vinifera HOM05D001145 ORTHO05D008176 2.0e-38 162.5 88 79.5
Cfa013013 Carpinus fangiana HOM05D001145 ORTHO05D008176 2.6e-38 162.2 88 79.5
Lj1g0021239 Lotus japonicus HOM05D001145 ORTHO05D008176 2.6e-38 162.2 88 80.7
DCAR_004584 Daucus carota HOM05D001145 ORTHO05D008176 3.4e-38 161.8 88 80.7
Atru.BG.19.p Acer truncatum HOM05D001145 ORTHO05D008176 4.4e-38 161.4 88 81.8
CANSAT25G1628 Cannabis sativa HOM05D001145 ORTHO05D008176 4.4e-38 161.4 88 79.5
Glyma.06G060200 Glycine max HOM05D001145 ORTHO05D008176 4.4e-38 161.4 88 80.7
Psat5g033120 Pisum sativum HOM05D001145 ORTHO05D008176 4.4e-38 161.4 88 79.5
Gohir.A05G060800 Gossypium hirsutum HOM05D001145 ORTHO05D008176 5.8e-38 161.0 88 80.7
Ciclev10007965m.g Citrus clementina HOM05D001145 ORTHO05D008176 7.6e-38 160.6 88 83.0
Gohir.D05G063000 Gossypium hirsutum HOM05D001145 ORTHO05D008176 9.9e-38 160.2 88 80.7
Gorai.009G064000 Gossypium raimondii HOM05D001145 ORTHO05D008176 9.9e-38 160.2 88 80.7
RcHm_v2.0_Chr6g0299151 Rosa chinensis HOM05D001145 ORTHO05D008176 2.2e-37 159.1 88 78.4
Prupe.1G397100 Prunus persica HOM05D001145 ORTHO05D008176 4.9e-37 157.9 88 78.4
VMungo1309G0760 Vigna mungo HOM05D001145 ORTHO05D008176 4.9e-37 157.9 88 77.3
Lsat_1_v5_gn_3_22540 Lactuca sativa HOM05D001145 ORTHO05D008176 8.3e-37 157.1 88 76.1
Lj7A738T100 Lonicera japonica HOM05D001145 ORTHO05D008176 1.1e-36 156.8 88 78.4
Duzib187G1480 Durio zibethinus HOM05D001145 ORTHO05D008176 1.4e-36 156.4 88 78.4
Sabra18G0019000 Salix brachista HOM05D001145 ORTHO05D008176 1.4e-36 156.4 87 81.6
Ciclev10007702m.g Citrus clementina HOM05D001145 ORTHO05D008176 1.9e-36 156.0 88 79.5
ECA246G4066 Erigeron canadensis HOM05D001145 ORTHO05D008176 2.4e-36 155.6 88 73.9
CDE07G1427 Ceratophyllum demersum HOM05D000821 ORTHO05D008176 3.2e-36 155.2 87 80.5
Nn2g12480 Nelumbo nucifera HOM05D001145 ORTHO05D008176 5.4e-36 154.5 88 78.4
Hma1.2p1_0392F.1_g142980 Hydrangea macrophylla HOM05D001145 ORTHO05D008176 1.2e-35 153.3 88 75.0
FAN27G3317 Fragaria x ananassa HOM05D001145 ORTHO05D008176 1.6e-35 152.9 91 75.8
Potri.018G015700 Populus trichocarpa HOM05D001145 ORTHO05D008176 1.6e-35 152.9 87 79.3
HanXRQChr17g0536341 Helianthus annuus HOM05D001145 ORTHO05D008176 2.1e-35 152.5 88 75.0
Oeu048541.1 Olea europaea HOM05D001145 ORTHO05D008176 2.7e-35 152.1 92 76.1
Os02g0792800 Oryza sativa ssp. japonica HOM05D001145 ORTHO05D008176 2.7e-35 152.1 88 77.3
FvH4_2g41330 Fragaria vesca HOM05D001145 ORTHO05D008176 3.5e-35 151.8 91 74.7
Potri.006G267300 Populus trichocarpa HOM05D001145 ORTHO05D008176 3.5e-35 151.8 88 78.4
Sabra06G0209600 Salix brachista HOM05D001145 ORTHO05D008176 3.5e-35 151.8 88 78.4
Cpa.g.sc148.47 Carica papaya HOM05D001145 ORTHO05D008176 4.6e-35 151.4 89 74.2
Nitab4.5_0000668g0080 Nicotiana tabacum HOM05D001145 ORTHO05D008176 4.6e-35 151.4 92 77.2
Sed0027737 Sechium edule HOM05D001145 ORTHO05D008176 4.6e-35 151.4 88 77.3
CDE04G1965 Ceratophyllum demersum HOM05D001145 ORTHO05D008176 6.0e-35 151.0 87 77.0
FAN15G1263 Fragaria x ananassa HOM05D001145 ORTHO05D008176 7.8e-35 150.6 91 74.7
Nitab4.5_0001110g0090 Nicotiana tabacum HOM05D001145 ORTHO05D008176 7.8e-35 150.6 92 76.1
Aqoxy7G03277 Aquilegia oxysepala HOM05D001145 ORTHO05D008176 1.0e-34 150.2 88 73.9
ClCG05G016090 Citrullus lanatus HOM05D001145 ORTHO05D008176 3.0e-34 148.7 88 76.1
TAR626G1257 Trochodendron aralioides HOM05D001145 ORTHO05D008176 6.6e-34 147.5 88 73.9
Sopen12g032380 Solanum pennellii HOM05D001145 ORTHO05D008176 8.6e-34 147.1 92 73.9
PGSC0003DMG401029274 Solanum tuberosum HOM05D001145 ORTHO05D008176 8.6e-34 147.1 92 73.9
Solyc12g096550.2 Solanum lycopersicum HOM05D001145 ORTHO05D008176 1.1e-33 146.7 92 73.9
TWI32G0797 Tripterygium wilfordii HOM05D001145 ORTHO05D008176 1.5e-33 146.4 88 72.7
Zm00001eb257630 Zea mays HOM05D001145 ORTHO05D008176 1.9e-33 146.0 88 73.9
CARHR294570 Cardamine hirsuta HOM05D001145 ORTHO05D008176 2.5e-33 145.6 88 72.7
Peaxi162Scf00459g00119 Petunia axillaris HOM05D001145 ORTHO05D008176 2.5e-33 145.6 92 73.9
Carub.0004s0444 Capsella rubella HOM05D001145 ORTHO05D008176 3.3e-33 145.2 89 75.3
Cc08_g06700 Coffea canephora HOM05D001145 ORTHO05D008176 3.3e-33 145.2 92 72.8
CAN.G566.49 Capsicum annuum HOM05D001145 ORTHO05D008176 4.3e-33 144.8 92 75.0
MELO3C016944.2 Cucumis melo HOM05D001145 ORTHO05D008176 5.6e-33 144.4 88 75.0
MBI15_g07484_MAGBIO Magnolia biondii HOM05D001145 ORTHO05D008176 5.6e-33 144.4 85 75.3
PSO063G6900 Papaver somniferum HOM05D001145 ORTHO05D008176 5.6e-33 144.4 88 71.6
PSO782G5236 Papaver somniferum HOM05D001145 ORTHO05D008176 5.6e-33 144.4 88 71.6
AT2G24820 Arabidopsis thaliana HOM05D001145 ORTHO05D008176 9.6e-33 143.7 89 74.2
Thhalv10000113m.g Eutrema salsugineum HOM05D001145 ORTHO05D008176 9.6e-33 143.7 88 72.7
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 9.6e-33 143.7 92 72.8
Aa31LG7G11580 Aethionema arabicum HOM05D001145 ORTHO05D008176 1.2e-32 143.3 88 71.6
CsaV3_4G036370 Cucumis sativus L. HOM05D001145 ORTHO05D008176 1.2e-32 143.3 88 73.9
AL4G15860 Arabidopsis lyrata HOM05D001145 ORTHO05D008176 2.1e-32 142.5 89 73.0
Migut.A00391 Erythranthe guttata HOM05D001145 ORTHO05D008176 2.1e-32 142.5 92 72.8
Sp4g03840 Schrenkiella parvula HOM05D001145 ORTHO05D008176 4.7e-32 141.4 89 73.0
A03p26990 Brassica napus HOM05D001145 ORTHO05D008176 8.1e-32 140.6 89 73.0
C03p32390 Brassica napus HOM05D001145 ORTHO05D008176 8.1e-32 140.6 89 73.0
BolC3t15580H Brassica oleracea HOM05D001145 ORTHO05D008176 8.1e-32 140.6 89 73.0
BraA03t11910Z Brassica rapa HOM05D001145 ORTHO05D008176 8.1e-32 140.6 89 73.0
THA.LOC104803608 Tarenaya hassleriana HOM05D001145 ORTHO05D008176 8.1e-32 140.6 89 73.0
HPP92_017165 Vanilla planifolia HOM05D001145 ORTHO05D008176 1.4e-31 139.8 88 70.5
Prupe.1G397200 Prunus persica HOM05D001145 ORTHO05D008176 8.9e-31 137.1 88 71.6
SalBow4G1746 Salvia bowleyana HOM05D001145 ORTHO05D008176 1.5e-30 136.3 92 69.6
SGA_v2.0_scaffold27G11633 Striga asiatica HOM05D001145 ORTHO05D008176 1.5e-30 136.3 92 71.7
ATR0580G386 Amborella trichopoda HOM05D001145 ORTHO05D008176 5.8e-30 134.4 87 72.4
AagrBONN_evm.TU.Sc2ySwM_344.3366 Anthoceros agrestis HOM05D001145 ORTHO05D008176 1.7e-29 132.9 87 71.3
MD08G1051400 Malus domestica HOM05D001145 ORTHO05D008176 4.6e-27 124.8 87 66.7
Pp3c11_12710 Physcomitrium patens HOM05D001145 ORTHO05D008176 6.0e-27 124.4 87 69.0
Pp3c7_15550 Physcomitrium patens HOM05D001145 ORTHO05D008176 1.3e-26 123.2 87 65.5
BcaB01g03000 Brassica carinata HOM05D001145 ORTHO05D008176 3.5e-19 98.6 65 70.8
Mapoly0030s0137 Marchantia polymorpha HOM05D001145 ORTHO05D008176 7.9e-19 97.4 81 54.3
Glyma.17G221500 Glycine max HOM05D001145 ORTHO05D008176 3.0e-18 95.5 65 69.2
Mapoly0030s0036 Marchantia polymorpha HOM05D001145 ORTHO05D008176 5.6e-17 91.3 80 52.5
CBR_g3534 Chara braunii HOM05D001145 ORTHO05D008176 1.0e-10 70.5 76 42.1
CBR_g19416 Chara braunii HOM05D001145 ORTHO05D008176 2.3e-10 69.3 62 46.8
CBR_g19421 Chara braunii HOM05D001145 ORTHO05D008176 5.1e-10 68.2 62 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4808 Anthoceros agrestis HOM05D001145 ORTHO05D001415 5.3e-07 58.2 82 37.8
Glyma.11G192300 Glycine max HOM05D001145 ORTHO05D001415 9.0e-07 57.4 87 33.3
Glyma.12G082100 Glycine max HOM05D001145 ORTHO05D001415 9.0e-07 57.4 87 33.3
Mapoly0028s0113 Marchantia polymorpha HOM05D001145 ORTHO05D001415 9.0e-07 57.4 82 34.1
Lj3g0004371 Lotus japonicus HOM05D001145 ORTHO05D001415 1.2e-06 57.0 87 34.5
Dinv16229 Davidia involucrata HOM05D001145 ORTHO05D001415 1.5e-06 56.6 86 34.9
Pp3c1_12190 Physcomitrium patens HOM05D001145 ORTHO05D050315 1.5e-06 56.6 49 53.1
Pp3c1_12270 Physcomitrium patens HOM05D001145 ORTHO05D050315 1.5e-06 56.6 49 53.1
Ah.01g014130 Amaranthus hybridus HOM05D001145 ORTHO05D001415 2.6e-06 55.8 63 41.3
CARHR151160 Cardamine hirsuta HOM05D001145 ORTHO05D001415 2.6e-06 55.8 98 32.7
AUR62029149 Chenopodium quinoa HOM05D001145 ORTHO05D001415 2.6e-06 55.8 75 40.0
ECA248G1672 Erigeron canadensis HOM05D001145 ORTHO05D001415 2.6e-06 55.8 87 33.3
Migut.D02297 Erythranthe guttata HOM05D001145 ORTHO05D001415 2.6e-06 55.8 86 34.9
HanXRQChr11g0346011 Helianthus annuus HOM05D001145 ORTHO05D001415 2.6e-06 55.8 87 33.3
Lj1C213G3 Lonicera japonica HOM05D001145 ORTHO05D001415 2.6e-06 55.8 87 33.3
QL01p014896 Quercus lobata HOM05D001145 ORTHO05D001415 2.6e-06 55.8 63 39.7
MSTRG.21084 Avicennia marina HOM05D001145 ORTHO05D001415 3.4e-06 55.5 87 32.2
AUR62014978 Chenopodium quinoa HOM05D001145 ORTHO05D001415 3.4e-06 55.5 75 38.7
Eucgr.B03924 Eucalyptus grandis HOM05D001145 ORTHO05D001415 3.4e-06 55.5 87 33.3
Pp3c3_19130 Physcomitrium patens HOM05D001145 ORTHO05D001415 4.5e-06 55.1 76 38.2
Sc21g0000340 Simmondsia chinensis HOM05D001145 ORTHO05D001415 4.5e-06 55.1 63 41.3
AT3G44880 Arabidopsis thaliana HOM05D001145 ORTHO05D001415 5.8e-06 54.7 98 32.7
EL10Ac9g22627 Beta vulgaris HOM05D001145 ORTHO05D001415 5.8e-06 54.7 75 37.3
Duzib150G0831 Durio zibethinus HOM05D001145 ORTHO05D001415 5.8e-06 54.7 87 33.3
Lsat_1_v5_gn_1_64901 Lactuca sativa HOM05D001145 ORTHO05D001415 5.8e-06 54.7 86 33.7
Thecc.09G298000 Theobroma cacao HOM05D001145 ORTHO05D001415 5.8e-06 54.7 87 33.3
vmacro03252 Vaccinium macrocarpon HOM05D001145 ORTHO05D001415 5.8e-06 54.7 62 38.7
COL.COLO4_19206 Corchorus olitorius HOM05D001145 ORTHO05D001415 7.6e-06 54.3 87 33.3
Medtr4g057200 Medicago truncatula HOM05D001145 ORTHO05D001415 7.6e-06 54.3 63 38.1
Potri.009G004100 Populus trichocarpa HOM05D001145 ORTHO05D001415 7.6e-06 54.3 63 41.3
Prupe.6G113600 Prunus persica HOM05D001145 ORTHO05D001415 7.6e-06 54.3 63 39.7
TPR.G36804 Trifolium pratense HOM05D001145 ORTHO05D001415 7.6e-06 54.3 63 38.1
TWI75G1305 Tripterygium wilfordii HOM05D001145 ORTHO05D001415 7.6e-06 54.3 62 40.3
Cpa.g.sc47.4 Carica papaya HOM05D001145 ORTHO05D001415 1.0e-05 53.9 63 38.1
CiPaw.14G107000 Carya illinoinensis HOM05D001145 ORTHO05D001415 1.0e-05 53.9 63 38.1
Ciclev10028147m.g Citrus clementina HOM05D001145 ORTHO05D001415 1.0e-05 53.9 63 38.1
PSO339G1579 Papaver somniferum HOM05D001145 ORTHO05D001415 1.0e-05 53.9 62 40.3
PSO801G0093 Papaver somniferum HOM05D001145 ORTHO05D001415 1.0e-05 53.9 62 40.3
PGR102G3025 Punica granatum HOM05D001145 ORTHO05D001415 1.0e-05 53.9 62 40.3
unitig_0.g1496 Utricularia gibba HOM05D001145 ORTHO05D001415 1.0e-05 53.9 76 35.5
HPP92_008396 Vanilla planifolia HOM05D001145 ORTHO05D001415 1.0e-05 53.9 82 35.4
VMungo1127G2205 Vigna mungo HOM05D001145 ORTHO05D001415 1.0e-05 53.9 63 38.1


User provided reference genes

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