Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1914.8 994 100.0
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1786.5 994 93.6
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1391.3 993 74.7
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 6.8e-312 1074.7 1034 56.7
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.4e-311 1073.2 949 60.7
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 5.2e-310 1067.8 1033 57.1
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.1e-309 1066.6 952 62.8
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.5e-309 1066.2 1037 56.2
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 7.0e-307 1057.4 1018 57.8
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 1.7e-305 1052.7 1063 54.8
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 3.8e-305 1051.6 1043 56.3
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 1.1e-304 1050.0 1038 56.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 1.4e-304 1049.7 1029 56.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 1.4e-304 1049.7 1033 56.6
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 4.2e-304 1048.1 1035 56.2
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 1.8e-302 1042.7 1038 55.6
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 4.4e-301 1038.1 1029 56.4
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 6.3e-300 1034.2 1029 55.9
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 8.2e-300 1033.9 1040 55.7
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 8.2e-300 1033.9 1037 55.7
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 5.3e-299 1031.2 1047 55.0
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 7.0e-299 1030.8 1045 54.7
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 1.3e-297 1026.5 1038 55.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 1.2e-295 1020.0 1031 55.4
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 8.0e-295 1017.3 1040 55.3
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 5.2e-294 1014.6 1033 55.1
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 6.7e-294 1014.2 1040 54.7
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.5e-293 1013.1 1106 52.9
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-293 1012.7 1033 54.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.8e-292 1008.8 1033 54.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 2.8e-292 1008.8 1037 53.9
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.8e-292 1008.8 1022 54.8
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.4e-291 1005.7 1038 54.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 2.2e-289 999.2 1039 54.1
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 3.8e-289 998.4 1048 53.2
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 5.0e-289 998.0 1035 52.7
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 7.2e-288 994.2 994 56.0
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 4.7e-287 991.5 1048 52.2
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 4.0e-286 988.4 1034 52.8
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 5.7e-285 984.6 1041 52.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 6.3e-284 981.1 1031 53.6
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 1.1e-283 980.3 1027 52.4
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 2.4e-283 979.2 1036 52.7
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 2.7e-282 975.7 1032 52.9
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.3e-281 972.6 1044 53.5
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 2.5e-280 969.1 1044 52.5
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 5.5e-280 968.0 1036 52.3
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.1e-279 966.1 1029 52.4
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 1.2e-277 960.3 1033 53.0
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 2.6e-277 959.1 1034 52.8
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 4.4e-277 958.4 1046 52.4
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 9.8e-277 957.2 1051 53.5
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 2.8e-276 955.7 1008 52.3
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 5.4e-275 951.4 1036 52.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 7.0e-275 951.0 1054 52.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 1.6e-274 949.9 1047 51.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 5.9e-274 948.0 1040 51.2
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 7.8e-274 947.6 1044 52.2
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 1.0e-273 947.2 1038 52.4
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 3.8e-273 945.3 1047 52.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 8.6e-273 944.1 1032 53.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 1.1e-272 943.7 1037 52.5
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 4.7e-271 938.3 1042 51.0
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.3e-270 936.0 1034 52.4
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 5.2e-270 934.9 1040 51.9
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 5.8e-269 931.4 1029 52.4
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 5.8e-269 931.4 1032 52.1
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 4.9e-268 928.3 1030 51.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 8.3e-268 927.5 1042 50.2
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 3.9e-265 918.7 1034 50.0
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 5.0e-265 918.3 918 56.3
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.5e-264 916.8 1035 50.8
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 3.3e-264 915.6 1039 50.4
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 7.3e-264 914.4 1034 51.1
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 9.5e-264 914.1 1035 50.8
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.6e-263 913.3 1037 50.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 2.8e-263 912.5 1049 50.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.5e-261 906.7 1045 50.1
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 9.8e-261 904.0 848 58.7
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 1.1e-259 900.6 1036 50.1
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 1.9e-259 899.8 1036 49.8
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.2e-258 897.1 1055 49.9
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.9e-256 889.8 1066 48.0
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.7e-250 869.4 1050 48.5
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 5.1e-249 865.1 1041 48.8
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 3.4e-245 852.4 1004 48.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.9e-244 849.4 1035 48.2
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.4e-238 830.5 1019 47.5
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.0e-237 826.6 927 51.2
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.4e-235 820.5 777 56.9
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.5e-232 810.4 1032 46.4
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.4e-230 803.1 729 58.0
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.7e-207 726.1 1044 44.8
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.5e-187 660.2 659 56.0
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.4e-187 658.3 659 56.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.1e-170 604.0 621 54.6
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 2.1e-154 550.8 564 55.9
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.5e-152 544.7 703 46.8
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 8.6e-148 528.9 1008 35.2
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 2.5e-147 527.3 542 56.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 2.1e-138 497.7 1016 35.8
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 9.9e-136 488.8 606 46.5
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.5e-120 438.3 904 34.0
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 5.8e-120 436.4 352 65.3
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.1e-85 320.1 867 30.0
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.6e-80 304.7 846 30.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.6e-80 304.7 323 51.1
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.5e-64 250.8 380 41.1
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 6.1e-61 240.4 455 36.7
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-50 205.3 310 43.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 6.6e-47 193.7 147 68.7
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 8.0e-45 186.8 149 69.8
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 8.3e-42 176.8 395 32.4
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.6e-32 146.0 540 27.6
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.2e-29 134.0 150 45.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.9e-25 122.5 435 28.0
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.2e-24 119.8 213 41.3
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.1e-22 113.2 115 50.4
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 7.3e-22 110.5 101 58.4
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 6.2e-21 107.5 148 35.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.8e-20 104.0 217 37.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.5e-19 102.8 67 62.7
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 4.4e-19 101.3 106 45.3
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.2e-16 93.2 130 41.5
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.3e-14 85.1 77 51.9
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 5.6e-14 84.3 148 39.9
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 7.3e-14 84.0 123 38.2
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 6.2e-13 80.9 223 31.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.4e-12 79.0 102 45.1
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.5e-11 76.3 75 50.7
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.2e-10 72.4 166 32.5
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-09 69.7 58 63.8
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.9e-09 69.3 65 46.2
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.9e-09 69.3 65 46.2
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 5.4e-09 67.8 33 87.9
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 2.3e-07 62.4 382 23.8
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 5.1e-07 61.2 59 57.6
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 8.7e-07 60.5 52 59.6


User provided reference genes

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