Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.5e-32 142.1 68 100.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.0e-31 139.4 68 97.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.6e-21 105.5 68 75.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 5.3e-17 90.5 62 67.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 7.0e-17 90.1 63 65.1
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 9.1e-17 89.7 61 70.5
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.2e-16 89.4 62 64.5
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.2e-16 89.4 62 64.5
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.6e-16 89.0 62 62.9
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.6e-16 89.0 62 66.1
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.7e-16 88.2 62 64.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.7e-16 88.2 62 64.5
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.5e-16 87.8 62 64.5
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.5e-16 87.4 62 62.9
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.5e-16 87.4 62 66.1
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 4.5e-16 87.4 68 61.8
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.0e-15 86.3 62 61.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.0e-15 86.3 62 61.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.0e-15 86.3 62 61.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.0e-15 86.3 62 62.9
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.3e-15 85.9 62 62.9
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-15 85.5 62 64.5
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.7e-15 85.5 64 59.4
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-15 85.1 62 67.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.2e-15 85.1 62 61.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.2e-15 85.1 61 67.2
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 2.2e-15 85.1 61 65.6
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 3.8e-15 84.3 62 66.1
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 3.8e-15 84.3 62 67.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 3.8e-15 84.3 62 66.1
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 3.8e-15 84.3 62 61.3
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 3.8e-15 84.3 61 67.2
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.8e-15 84.3 61 67.2
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.8e-15 84.3 61 67.2
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 3.8e-15 84.3 63 60.3
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 5.0e-15 84.0 67 59.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 5.0e-15 84.0 62 66.1
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.0e-15 84.0 61 67.2
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 5.0e-15 84.0 47 74.5
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 6.5e-15 83.6 62 66.1
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 6.5e-15 83.6 62 66.1
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 6.5e-15 83.6 62 66.1
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 6.5e-15 83.6 62 66.1
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 6.5e-15 83.6 65 61.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.5e-15 83.6 63 63.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 8.5e-15 83.2 62 62.9
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.5e-15 83.2 53 69.8
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-14 82.8 62 61.3
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.1e-14 82.8 62 66.1
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.5e-14 82.4 62 59.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.5e-14 82.4 62 59.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.5e-14 82.4 61 62.3
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.5e-14 82.4 62 58.1
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.5e-14 82.4 63 63.5
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.5e-14 82.4 71 60.6
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.5e-14 82.4 62 59.7
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.9e-14 82.0 62 59.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.9e-14 82.0 66 60.6
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.9e-14 82.0 61 65.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.9e-14 82.0 65 56.9
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.9e-14 82.0 62 61.3
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.5e-14 81.6 71 60.6
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.5e-14 81.6 64 62.5
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.5e-14 81.6 73 56.2
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.5e-14 81.6 61 65.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.2e-14 81.3 62 59.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-14 81.3 71 60.6
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-14 81.3 71 60.6
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 4.2e-14 80.9 58 65.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 4.2e-14 80.9 62 59.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 4.2e-14 80.9 61 60.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 4.2e-14 80.9 70 57.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.2e-14 80.9 62 58.1
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 4.2e-14 80.9 59 64.4
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 5.5e-14 80.5 62 58.1
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 5.5e-14 80.5 43 81.4
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.5e-14 80.5 63 61.9
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.5e-14 80.5 63 61.9
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 5.5e-14 80.5 60 65.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.2e-14 80.1 43 79.1
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 7.2e-14 80.1 56 64.3
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 7.2e-14 80.1 63 60.3
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 7.2e-14 80.1 73 53.4
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 9.4e-14 79.7 55 58.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 9.4e-14 79.7 71 57.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.2e-13 79.3 62 59.7
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.2e-13 79.3 63 60.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.2e-13 79.3 62 56.5
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-13 79.3 62 56.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-13 79.0 62 54.8
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.6e-13 79.0 60 63.3
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.1e-13 78.6 60 61.7
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-13 78.6 43 79.1
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.1e-13 78.6 62 59.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.1e-13 78.6 65 60.0
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.1e-13 78.6 67 59.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.7e-13 78.2 60 61.7
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.6e-13 77.8 65 60.0
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.6e-13 77.8 42 81.0
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.6e-13 77.8 67 58.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.6e-13 77.8 54 66.7
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.7e-13 77.4 67 58.2
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.7e-13 77.4 67 55.2
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 6.1e-13 77.0 63 58.7
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-13 76.6 67 59.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-13 76.6 67 59.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 8.0e-13 76.6 45 73.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 8.0e-13 76.6 46 73.9
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-12 76.3 45 75.6
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.0e-12 76.3 63 54.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.0e-12 76.3 62 54.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-12 75.9 62 53.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.4e-12 75.9 52 61.5
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.4e-12 75.9 70 52.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.4e-12 75.9 70 52.9
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-12 75.5 43 76.7
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.8e-12 75.5 57 59.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.8e-12 75.5 43 69.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.8e-12 75.5 42 76.2
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.3e-12 75.1 45 73.3
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.3e-12 75.1 62 53.2
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.3e-12 75.1 46 71.7
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.0e-12 74.3 69 55.1
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.0e-12 74.3 62 54.8
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 6.8e-12 73.6 45 71.1
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 8.8e-12 73.2 62 56.5
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-11 72.0 62 51.6
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.4e-11 71.2 65 53.8
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 4.4e-11 70.9 62 54.8
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.3e-10 69.3 62 56.5
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.7e-10 68.9 62 56.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.2e-10 68.6 62 54.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 6.3e-10 67.0 63 55.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 6.3e-10 67.0 48 58.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.1e-09 66.2 47 55.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.4e-09 65.9 47 63.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.8e-09 65.5 48 56.2
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.4e-09 65.1 59 50.8
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.6e-08 62.4 37 75.7
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 7.7e-08 60.1 48 62.5
EL10Ac7g18126 Beta vulgaris HOM05D004803 ORTHO05D005653 1.7e-07 58.9 57 49.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-07 57.8 54 53.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 8.6e-07 56.6 57 49.1
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.9e-06 55.5 44 54.5
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 9.5e-06 53.1 50 46.0


User provided reference genes

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