Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 0.0e+00 1119.8 561 100.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 0.0e+00 1077.8 561 96.6
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 5.9e-263 910.6 537 86.0
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.4e-243 846.3 639 69.2
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.6e-236 822.8 527 78.4
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.2e-234 816.6 562 71.7
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 4.9e-233 811.2 562 72.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 8.4e-225 783.9 561 70.4
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.1e-223 779.2 559 70.3
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 6.0e-223 777.7 561 69.7
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.7e-222 776.2 561 69.5
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.1e-221 773.5 561 69.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.6e-220 769.6 561 68.1
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 8.1e-220 767.3 559 68.0
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.1e-219 766.9 559 68.9
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.4e-219 766.5 548 70.3
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 6.9e-219 764.2 560 69.8
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.0e-219 763.8 562 68.5
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.2e-218 763.5 521 72.0
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.4e-218 761.9 539 69.9
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.9e-217 758.8 518 71.2
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 8.4e-217 757.3 532 69.9
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 9.3e-216 753.8 537 70.4
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 9.3e-216 753.8 559 67.6
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 2.1e-215 752.7 518 71.2
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.5e-215 751.9 561 67.2
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 6.0e-215 751.1 562 67.1
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.9e-215 750.7 565 67.3
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.9e-215 750.7 562 67.1
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.3e-214 750.0 562 67.6
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.3e-214 749.2 572 66.4
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.0e-214 748.8 535 70.1
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 5.1e-214 748.0 560 67.1
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 6.6e-214 747.7 560 67.1
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 6.6e-214 747.7 572 66.1
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.5e-213 746.5 560 67.3
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.6e-213 744.6 559 68.2
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 7.4e-213 744.2 532 69.7
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 9.6e-213 743.8 561 66.0
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 9.6e-213 743.8 519 70.7
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.1e-212 742.7 548 67.0
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 3.6e-212 741.9 546 67.4
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.8e-212 741.5 558 66.3
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.8e-212 741.5 521 71.0
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.1e-211 740.3 480 73.8
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.4e-211 739.2 559 66.4
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 4.0e-211 738.4 550 68.4
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 5.3e-211 738.0 547 67.3
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 9.0e-211 737.3 519 70.1
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.5e-210 736.5 563 65.0
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-210 736.1 554 67.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.6e-210 735.7 519 70.1
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.5e-210 734.9 519 69.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 7.6e-210 734.2 561 64.9
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.3e-209 733.4 561 66.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.7e-209 733.0 519 69.9
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-209 732.3 561 64.9
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-209 732.3 561 64.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.9e-209 731.5 524 69.7
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 4.9e-209 731.5 490 71.2
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 5.5e-208 728.0 554 65.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.2e-207 726.9 533 68.1
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.6e-207 726.5 559 65.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-206 723.4 562 65.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 6.7e-206 721.1 513 69.8
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 8.7e-206 720.7 531 67.8
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.1e-205 720.3 560 64.6
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.9e-205 719.5 562 65.5
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.3e-204 716.8 561 64.2
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.6e-204 716.5 559 66.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.6e-204 716.5 531 67.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.4e-203 712.6 520 66.5
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 5.3e-203 711.4 561 63.8
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 9.0e-203 710.7 551 66.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.2e-202 710.3 531 66.7
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.5e-202 708.4 521 68.5
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.1e-200 703.7 564 65.2
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-200 703.7 559 63.7
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.4e-200 703.4 560 64.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 5.5e-200 701.4 560 64.5
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 9.3e-200 700.7 530 66.8
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.2e-199 700.3 562 63.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.1e-199 699.5 561 62.9
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 4.6e-199 698.4 560 62.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 6.7e-198 694.5 559 63.3
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.5e-197 692.6 562 62.1
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 4.3e-197 691.8 560 63.9
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 2.1e-196 689.5 564 63.5
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.8e-196 689.1 561 62.9
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.8e-196 689.1 469 69.5
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 3.7e-196 688.7 560 62.1
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 8.2e-196 687.6 554 63.2
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.8e-195 686.4 563 62.7
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.8e-195 686.4 564 63.1
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.4e-195 686.0 564 63.1
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.1e-195 685.6 523 66.9
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.1e-195 685.3 522 65.1
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 6.9e-195 684.5 487 68.2
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 2.0e-194 682.9 563 62.2
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 4.5e-194 681.8 523 65.6
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-193 680.2 561 61.3
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.8e-193 678.7 560 63.0
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 3.8e-193 678.7 523 65.6
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.2e-192 675.6 580 60.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 4.2e-192 675.2 565 61.8
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.7e-191 672.5 489 67.3
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.1e-189 667.2 524 64.5
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.2e-188 662.9 557 61.2
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 6.3e-188 661.4 564 61.0
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 8.2e-188 661.0 460 69.8
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 4.1e-187 658.7 557 59.1
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 4.1e-187 658.7 557 59.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 4.5e-186 655.2 542 64.4
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.2e-185 652.9 548 60.8
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.4e-182 643.7 552 60.7
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 6.3e-180 634.8 406 74.9
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.9e-176 623.2 549 59.4
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.4e-176 620.9 579 56.8
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 6.7e-174 614.8 517 61.3
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 5.5e-168 595.1 402 69.7
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.4e-165 585.5 563 54.0
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.3e-161 573.9 501 60.1
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 6.5e-161 571.6 570 54.0
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 7.2e-160 568.2 532 57.5
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.0e-153 547.7 551 53.9
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.2e-149 534.3 434 64.1
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 7.5e-149 531.6 374 71.4
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.3e-148 530.8 561 53.1
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.7e-146 521.5 536 51.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.9e-144 516.9 551 51.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.8e-142 510.4 501 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.7e-132 477.2 561 48.3
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.2e-130 471.1 362 63.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.9e-129 466.1 435 58.4
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.1e-128 464.5 556 47.1
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.1e-123 446.0 503 49.5
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.5e-120 434.9 551 45.6
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 8.1e-119 431.8 384 59.1
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.8e-106 388.7 390 53.6
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.1e-96 358.2 502 42.2
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-91 341.7 353 54.4
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 7.1e-91 339.0 506 40.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.5e-85 321.2 310 51.6
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 7.2e-67 259.2 166 77.1
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 5.0e-60 236.5 251 53.0
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.2e-58 231.9 255 52.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 5.2e-57 226.5 461 32.3
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 9.4e-51 205.7 467 33.6
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 7.0e-46 189.5 111 81.1
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 6.5e-44 183.0 91 92.3
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.9e-43 181.4 415 31.1
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 7.2e-43 179.5 96 83.3
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.8e-39 166.8 364 33.2
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.1e-38 165.6 418 29.9
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-36 158.3 171 60.8
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.3e-36 157.9 169 46.2
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 6.1e-34 149.8 118 63.6
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 9.8e-32 142.5 160 53.8
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 5.0e-28 130.2 155 43.9
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-21 109.0 88 53.4
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 3.1e-17 94.4 168 38.7
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.4e-14 85.5 40 97.5
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.0e-12 79.3 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.7e-12 78.6 48 72.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-09 68.6 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 3.1e-09 67.8 33 84.8
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 2.0e-08 65.1 156 28.2
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 2.9e-07 61.2 56 55.4
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 3.7e-07 60.8 244 24.6
MD11G1294100 Malus domestica HOM05D002999 ORTHO05D003137 6.4e-07 60.1 203 25.6
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.4e-06 58.9 244 24.2
CSS0026757 Camellia sinensis var. sinensis HOM05D002999 ORTHO05D003137 1.4e-06 58.9 358 21.8
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 2.4e-06 58.2 244 23.4
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 2.4e-06 58.2 244 23.4
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 4.1e-06 57.4 231 21.2
MD13G1176000 Malus domestica HOM05D002999 ORTHO05D003137 4.1e-06 57.4 146 27.4
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 5.4e-06 57.0 244 23.4


User provided reference genes

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