Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.8e-151 538.1 269 100.0
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.3e-140 502.3 255 97.6
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 9.2e-137 490.3 244 100.0
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 3.3e-118 428.7 255 81.6
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 2.8e-117 425.6 256 81.6
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.6e-103 377.9 251 73.3
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.4e-97 360.1 255 71.4
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 2.1e-93 346.3 257 68.1
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 4.5e-91 338.6 275 64.4
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 4.5e-91 338.6 248 66.1
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 1.7e-90 336.7 255 65.1
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 4.9e-90 335.1 255 66.3
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 3.2e-89 332.4 275 62.9
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 9.3e-89 330.9 255 67.1
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.7e-88 329.3 255 67.1
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 2.7e-88 329.3 249 67.1
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 3.5e-88 328.9 275 61.8
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 7.9e-88 327.8 266 64.3
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 3.0e-87 325.9 230 71.3
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 8.7e-87 324.3 234 69.7
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 1.1e-86 323.9 255 64.3
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.1e-86 323.9 257 66.5
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 7.4e-86 321.2 277 62.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 7.4e-86 321.2 257 64.6
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 7.4e-86 321.2 277 62.1
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 7.4e-86 321.2 257 64.6
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 7.4e-86 321.2 277 62.1
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 7.4e-86 321.2 253 64.8
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.3e-85 320.5 259 65.6
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.3e-85 320.5 257 65.4
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 2.1e-85 319.7 232 70.3
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 2.1e-85 319.7 257 64.2
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.1e-85 319.7 255 64.3
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 2.8e-85 319.3 257 65.0
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.7e-85 318.9 255 64.3
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 3.7e-85 318.9 255 63.9
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.8e-85 318.5 259 65.3
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 4.8e-85 318.5 256 64.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 1.4e-84 317.0 258 64.3
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 1.8e-84 316.6 201 76.1
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 4.0e-84 315.5 219 70.8
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 4.0e-84 315.5 203 75.4
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 6.9e-84 314.7 203 75.4
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 6.9e-84 314.7 203 75.4
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 6.9e-84 314.7 203 74.9
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 6.9e-84 314.7 203 74.9
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.5e-83 313.5 241 66.0
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 2.6e-83 312.8 204 73.5
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 2.6e-83 312.8 198 78.3
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 1.0e-82 310.8 261 65.1
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.0e-82 310.8 190 78.4
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 2.9e-82 309.3 204 74.0
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 2.9e-82 309.3 255 63.5
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 6.5e-82 308.1 190 78.4
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 6.5e-82 308.1 203 73.9
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 8.4e-82 307.8 234 67.1
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 1.4e-81 307.0 269 61.0
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 1.9e-81 306.6 194 74.7
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 1.9e-81 306.6 194 74.7
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 1.9e-81 306.6 199 73.9
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 2.5e-81 306.2 198 75.3
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 2.5e-81 306.2 205 73.7
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 3.2e-81 305.8 198 75.8
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 3.2e-81 305.8 207 71.5
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 3.2e-81 305.8 249 65.5
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 4.2e-81 305.4 199 74.9
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 7.1e-81 304.7 234 64.5
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 9.3e-81 304.3 204 70.6
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 9.3e-81 304.3 223 66.8
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 1.2e-80 303.9 192 76.0
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.2e-80 303.9 265 61.1
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 1.6e-80 303.5 203 72.9
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 2.7e-80 302.8 241 65.6
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 2.7e-80 302.8 257 62.3
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.7e-80 302.8 199 74.9
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 6.0e-80 301.6 191 77.0
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 6.0e-80 301.6 203 72.9
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 7.9e-80 301.2 267 60.3
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 7.9e-80 301.2 188 78.7
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 7.9e-80 301.2 277 58.1
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.3e-79 300.4 205 73.7
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.3e-79 300.4 213 69.0
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.3e-79 300.4 203 71.9
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 1.8e-79 300.1 207 70.0
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.3e-79 299.7 275 58.2
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 2.3e-79 299.7 203 72.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 3.0e-79 299.3 221 66.1
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 3.0e-79 299.3 188 76.1
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 3.9e-79 298.9 207 69.1
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 3.9e-79 298.9 224 67.4
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 6.7e-79 298.1 264 58.0
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 1.5e-78 297.0 190 75.3
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.9e-78 296.6 212 70.3
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 2.5e-78 296.2 214 70.6
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 5.7e-78 295.0 192 72.9
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 1.6e-77 293.5 233 63.5
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 3.7e-77 292.4 188 77.1
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.7e-77 292.4 252 62.7
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 4.8e-77 292.0 212 68.4
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 6.3e-77 291.6 215 67.0
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 8.2e-77 291.2 205 71.2
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 1.1e-76 290.8 236 61.4
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 2.4e-76 289.7 188 73.4
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 4.1e-76 288.9 212 67.5
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 4.5e-75 285.4 190 73.2
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 1.0e-74 284.3 214 65.9
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.7e-74 283.5 218 66.5
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 1.4e-73 280.4 252 57.9
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 5.5e-73 278.5 190 66.8
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 2.1e-72 276.6 234 61.1
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 3.6e-72 275.8 197 70.1
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 4.6e-72 275.4 273 53.8
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 2.3e-71 273.1 189 71.4
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 8.7e-71 271.2 207 64.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.9e-70 270.0 355 45.9
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 4.3e-70 268.9 203 67.0
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 7.9e-64 248.1 226 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 8.8e-63 244.6 255 49.8
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 4.4e-62 242.3 194 62.4
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 6.3e-61 238.4 190 58.9
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 4.1e-60 235.7 185 61.6
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 1.0e-58 231.1 149 73.2
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 2.2e-58 229.9 190 58.4
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 5.0e-58 228.8 196 61.2
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.4e-57 227.3 151 74.8
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.6e-56 223.8 162 69.8
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.7e-54 215.3 151 68.9
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 4.1e-52 209.1 193 56.0
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 1.1e-49 201.1 193 53.9
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-49 201.1 151 69.5
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.4e-49 198.0 216 50.9
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 3.0e-47 193.0 189 47.1
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 2.6e-46 189.9 152 63.2
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 2.0e-43 180.3 163 58.3
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-41 174.1 113 74.3
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 3.2e-41 172.9 149 61.1
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 4.4e-38 162.5 188 45.2
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.1e-32 143.7 131 58.0
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 3.6e-32 142.9 106 67.0
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 3.6e-32 142.9 106 67.0
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.0e-31 141.4 183 42.6
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 2.6e-30 136.7 93 74.2
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.0e-28 128.6 105 62.9
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 3.5e-27 126.3 78 78.2
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 4.5e-27 125.9 93 65.6
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.7e-26 124.0 92 70.7
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.9e-26 123.2 66 90.9
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 3.2e-20 103.2 101 53.5
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 3.3e-17 93.2 189 40.2
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 3.1e-15 86.7 62 71.0
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 5.8e-14 82.4 230 30.9
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 2.0e-11 73.9 164 30.5
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.2e-08 64.7 142 31.7
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 2.8e-08 63.5 139 28.8
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 8.1e-08 62.0 141 29.8
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 8.1e-08 62.0 125 30.4
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 1.1e-07 61.6 121 33.1
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.1e-07 61.6 189 28.0
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 3.1e-07 60.1 122 29.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 4.0e-07 59.7 141 30.5
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 5.2e-07 59.3 189 29.1
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 5.2e-07 59.3 140 28.6
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 8.9e-07 58.5 192 27.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 8.9e-07 58.5 189 25.9
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 8.9e-07 58.5 141 27.0
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.2e-06 58.2 192 27.6
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 1.2e-06 58.2 141 26.2
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.2e-06 58.2 192 26.6
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 1.5e-06 57.8 189 27.5
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 2.6e-06 57.0 192 26.0
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 3.4e-06 56.6 192 26.0
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 3.4e-06 56.6 192 27.1
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 3.4e-06 56.6 186 27.4
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 4.4e-06 56.2 192 26.0
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 4.4e-06 56.2 189 25.4
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 4.4e-06 56.2 143 29.4
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 5.8e-06 55.8 192 26.0
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 5.8e-06 55.8 191 26.2
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 7.5e-06 55.5 140 28.6
Os03g0201600 Oryza sativa ssp. japonica HOM05D004609 ORTHO05D005537 7.5e-06 55.5 36 66.7
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 9.9e-06 55.1 192 26.0
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 9.9e-06 55.1 142 25.4
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 9.9e-06 55.1 146 27.4


User provided reference genes

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