Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.8e-302 1041.2 533 100.0
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.1e-293 1012.7 533 97.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 4.5e-228 794.7 513 79.9
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.0e-224 783.5 522 78.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.4e-221 773.1 523 76.3
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 8.5e-219 763.8 522 75.3
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 8.0e-217 757.3 526 74.0
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 1.5e-215 753.1 526 71.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.3e-215 751.9 524 73.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.8e-213 746.1 534 73.2
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 2.4e-213 745.7 534 73.4
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-211 740.3 517 72.5
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.0e-211 740.3 524 72.5
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.9e-211 738.8 522 73.4
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 6.5e-211 737.6 530 71.3
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.5e-210 736.5 530 71.3
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 7.2e-210 734.2 524 73.1
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.6e-209 733.0 518 73.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.1e-209 732.6 526 70.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.0e-208 730.3 541 70.6
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.8e-208 729.6 524 72.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 3.0e-208 728.8 531 71.8
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.0e-208 728.4 525 72.2
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.2e-207 726.9 525 72.0
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.2e-207 726.9 523 70.9
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 3.4e-207 725.3 521 71.4
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 3.4e-207 725.3 525 70.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 4.4e-207 724.9 530 70.6
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 5.7e-207 724.5 522 72.4
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 9.8e-207 723.8 524 72.1
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.3e-206 723.4 521 71.8
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.3e-206 723.4 530 69.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.7e-206 723.0 529 71.3
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.8e-206 722.2 527 69.4
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 2.8e-206 722.2 526 71.1
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 4.8e-206 721.5 527 69.4
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 4.8e-206 721.5 520 69.2
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 6.3e-206 721.1 526 71.3
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.1e-205 720.3 528 70.6
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.4e-205 719.9 525 69.7
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 3.1e-205 718.8 524 69.8
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 4.1e-205 718.4 526 71.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 4.1e-205 718.4 518 70.7
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.4e-205 718.0 523 70.9
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 5.4e-205 718.0 525 70.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 7.0e-205 717.6 526 69.0
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 9.1e-205 717.2 531 70.2
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.2e-204 716.8 540 70.0
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.2e-204 716.8 525 69.9
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.0e-204 716.1 526 70.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 2.7e-204 715.7 524 70.2
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.7e-204 715.7 522 69.7
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 3.5e-204 715.3 526 70.3
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 5.9e-204 714.5 587 65.8
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 5.9e-204 714.5 526 70.7
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.0e-203 713.8 525 68.4
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.3e-203 713.4 527 69.4
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.3e-203 713.4 527 69.4
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.3e-203 713.4 527 69.6
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.7e-203 713.0 527 69.3
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.3e-203 712.6 533 69.8
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 5.0e-203 711.4 529 70.1
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 6.6e-203 711.1 527 70.0
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 8.6e-203 710.7 537 68.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 8.6e-203 710.7 531 68.5
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.5e-202 709.1 527 69.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 4.2e-202 708.4 526 70.9
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.2e-202 708.4 520 70.6
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.1e-201 706.1 537 68.5
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 4.7e-201 704.9 523 71.1
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 8.0e-201 704.1 560 66.6
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 3.0e-200 702.2 544 68.4
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 8.9e-200 700.7 525 68.4
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.7e-199 698.0 523 69.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.5e-199 697.6 530 68.1
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.7e-198 696.4 502 72.5
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.1e-197 693.7 518 68.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.2e-196 690.3 538 67.7
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 4.5e-196 688.3 516 70.0
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.7e-195 686.4 547 65.6
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.9e-195 685.3 525 69.0
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 8.6e-195 684.1 539 67.3
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.3e-192 676.0 525 66.9
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 8.9e-192 674.1 494 71.7
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.4e-191 671.8 515 66.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.9e-189 666.4 490 70.8
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.3e-187 660.2 476 72.1
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 3.9e-187 658.7 553 63.3
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 3.3e-186 655.6 534 64.2
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.6e-183 646.0 479 69.9
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.9e-182 641.7 534 63.1
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-180 637.1 486 68.7
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 2.1e-172 609.8 585 60.5
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.6e-169 600.1 534 61.0
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 5.4e-165 585.1 546 59.0
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 5.1e-163 578.6 501 63.9
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 7.3e-162 574.7 410 72.0
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.2e-158 563.1 407 71.0
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.4e-151 539.3 406 69.2
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.9e-115 419.5 534 48.5
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.8e-113 413.3 348 62.9
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.8e-110 402.9 549 43.2
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.1e-109 401.4 271 77.5
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 3.2e-109 399.8 528 49.1
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.2e-109 399.4 553 43.6
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 2.0e-106 390.6 527 43.3
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 5.7e-106 389.0 551 42.6
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 2.5e-101 373.6 291 69.1
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 8.8e-99 365.2 277 69.0
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.5e-98 364.4 317 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.7e-97 360.9 542 39.3
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 9.1e-96 355.1 303 63.7
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.2e-74 285.0 420 39.8
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.7e-71 273.9 308 51.6
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.0e-70 270.4 173 76.3
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.7e-68 263.1 628 31.4
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.9e-57 226.5 151 77.5
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.3e-54 217.6 220 54.5
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.1e-52 211.1 162 67.3
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.2e-48 196.8 269 46.5
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.1e-45 188.7 123 74.8
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.9e-45 188.0 706 26.1
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.8e-44 184.1 98 87.8
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.1e-38 163.3 112 71.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.6e-34 151.0 118 66.1
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.6e-29 133.3 126 54.8
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-27 128.6 97 64.9
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.7e-25 121.7 178 39.3
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 3.8e-25 120.6 77 77.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.8e-17 94.0 94 54.3
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 9.3e-16 89.4 51 86.3
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.3e-14 84.7 100 46.0
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 3.2e-08 64.3 152 30.9
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 9.4e-08 62.8 52 67.3
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 6.7e-06 56.6 422 22.0


User provided reference genes

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