Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025498 Chenopodium quinoa HOM05D003529 ORTHO05D004106 9.0e-91 337.0 186 100.0
AUR62008739 Chenopodium quinoa HOM05D003529 ORTHO05D004106 2.4e-75 285.8 189 85.7
EL10Ac7g17606 Beta vulgaris HOM05D003529 ORTHO05D004106 5.0e-49 198.4 189 62.4
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 6.1e-23 111.7 157 43.9
Sc17g0003040 Simmondsia chinensis HOM05D003529 ORTHO05D004106 1.0e-22 110.9 160 41.2
PGR119G1167 Punica granatum HOM05D003529 ORTHO05D004106 1.8e-22 110.2 162 42.6
Hma1.2p1_0212F.1_g090160 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 6.8e-22 108.2 161 44.7
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 2.0e-21 106.7 161 42.9
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 7.5e-21 104.8 157 45.2
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 9.8e-21 104.4 157 46.5
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 1.3e-20 104.0 160 38.8
Atru.chr5.1067 Acer truncatum HOM05D003529 ORTHO05D004106 2.2e-20 103.2 161 42.2
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 2.2e-20 103.2 166 42.8
CSS0040208 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 3.7e-20 102.4 163 45.4
Ciclev10022679m.g Citrus clementina HOM05D003529 ORTHO05D004106 3.7e-20 102.4 159 42.8
RcHm_v2.0_Chr7g0242001 Rosa chinensis HOM05D003529 ORTHO05D004106 4.9e-20 102.1 161 39.1
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 6.3e-20 101.7 157 41.4
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 6.3e-20 101.7 164 40.9
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 2.4e-19 99.8 182 38.5
Gorai.007G125400 Gossypium raimondii HOM05D003529 ORTHO05D004106 2.4e-19 99.8 160 40.6
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 2.4e-19 99.8 160 40.0
Gohir.A11G112000 Gossypium hirsutum HOM05D003529 ORTHO05D004106 4.1e-19 99.0 160 40.0
Gohir.D11G117100 Gossypium hirsutum HOM05D003529 ORTHO05D004106 5.4e-19 98.6 160 40.0
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 5.4e-19 98.6 157 42.0
Thecc.01G308200 Theobroma cacao HOM05D003529 ORTHO05D004106 9.2e-19 97.8 157 42.0
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 1.2e-18 97.4 161 39.8
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 1.6e-18 97.1 158 38.0
DCAR_002866 Daucus carota HOM05D003529 ORTHO05D004106 2.0e-18 96.7 158 38.0
MD03G1298600 Malus domestica HOM05D003529 ORTHO05D004106 2.0e-18 96.7 162 40.1
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 2.7e-18 96.3 160 41.2
Phvul.007G217000 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 3.5e-18 95.9 166 39.2
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 4.5e-18 95.5 155 43.2
Gohir.A12G127800 Gossypium hirsutum HOM05D003529 ORTHO05D004106 4.5e-18 95.5 157 40.8
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 4.5e-18 95.5 160 43.1
Lj1C21T4 Lonicera japonica HOM05D003529 ORTHO05D004106 7.8e-18 94.7 169 40.8
VMungo0720G2108 Vigna mungo HOM05D003529 ORTHO05D004106 7.8e-18 94.7 166 39.2
Gohir.D12G131300 Gossypium hirsutum HOM05D003529 ORTHO05D004106 1.0e-17 94.4 157 40.1
Gorai.008G142600 Gossypium raimondii HOM05D003529 ORTHO05D004106 1.0e-17 94.4 157 40.1
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 1.0e-17 94.4 160 44.4
Haze_04994 Corylus avellana HOM05D003529 ORTHO05D004106 1.3e-17 94.0 157 44.6
Glyma.02G015200 Glycine max HOM05D003529 ORTHO05D004106 1.3e-17 94.0 164 38.4
Prupe.8G268600 Prunus persica HOM05D003529 ORTHO05D004106 1.3e-17 94.0 159 39.6
CAN.G668.31 Capsicum annuum HOM05D003529 ORTHO05D004106 1.7e-17 93.6 190 37.9
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.7e-17 93.6 178 37.6
Haze_04995 Corylus avellana HOM05D003529 ORTHO05D004106 2.3e-17 93.2 157 44.6
Glyma.10G015800 Glycine max HOM05D003529 ORTHO05D004106 2.3e-17 93.2 162 40.1
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.3e-17 93.2 160 38.1
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 2.9e-17 92.8 162 40.1
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 3.9e-17 92.4 163 40.5
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 3.9e-17 92.4 163 40.5
QL12p028794 Quercus lobata HOM05D003529 ORTHO05D004106 5.0e-17 92.0 162 40.1
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 6.6e-17 91.7 168 40.5
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 1.1e-16 90.9 157 38.2
ClCG09G005350 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.5e-16 90.5 157 40.8
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 1.5e-16 90.5 168 39.9
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.9e-16 90.1 164 41.5
COL.COLO4_23282 Corchorus olitorius HOM05D003529 ORTHO05D004106 2.5e-16 89.7 157 39.5
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 4.3e-16 89.0 161 41.0
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 5.6e-16 88.6 175 37.7
Eucgr.K03517 Eucalyptus grandis HOM05D003529 ORTHO05D004106 5.6e-16 88.6 165 36.4
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 9.5e-16 87.8 160 40.0
Aqoxy5G00808 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 9.5e-16 87.8 165 38.2
MELO3C015948.2 Cucumis melo HOM05D003529 ORTHO05D004106 9.5e-16 87.8 157 39.5
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 9.5e-16 87.8 170 37.1
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.6e-15 87.0 159 38.4
Ca_10307_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 2.1e-15 86.7 159 37.7
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 2.1e-15 86.7 157 34.4
Lj5g0005836 Lotus japonicus HOM05D003529 ORTHO05D004106 2.1e-15 86.7 160 38.1
Hma1.2p1_0494F.1_g165600 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 2.8e-15 86.3 170 37.6
Lsat_1_v5_gn_8_165720 Lactuca sativa HOM05D003529 ORTHO05D004106 2.8e-15 86.3 158 34.8
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 8.0e-15 84.7 154 39.0
AL5G45400 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 8.0e-15 84.7 169 37.9
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 8.0e-15 84.7 159 39.0
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 8.0e-15 84.7 160 39.4
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 8.0e-15 84.7 161 36.0
Lalb_Chr21g0309411 Lupinus albus HOM05D003529 ORTHO05D004106 1.0e-14 84.3 158 37.3
unitig_578.g16622 Utricularia gibba HOM05D003529 ORTHO05D004106 1.0e-14 84.3 160 39.4
Sc05g0003300 Simmondsia chinensis HOM05D003529 ORTHO05D004106 1.8e-14 83.6 157 38.9
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 2.3e-14 83.2 171 38.6
CARHR172920 Cardamine hirsuta HOM05D003529 ORTHO05D004106 2.3e-14 83.2 168 39.9
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 2.3e-14 83.2 159 37.1
Nitab4.5_0002454g0010 Nicotiana tabacum HOM05D003529 ORTHO05D004106 3.1e-14 82.8 155 39.4
Nitab4.5_0005587g0040 Nicotiana tabacum HOM05D003529 ORTHO05D004106 3.1e-14 82.8 162 39.5
Peaxi162Scf00147g00094 Petunia axillaris HOM05D003529 ORTHO05D004106 4.0e-14 82.4 148 39.2
CsaV3_7G029720 Cucumis sativus L. HOM05D003529 ORTHO05D004106 5.2e-14 82.0 157 38.2
DCAR_005779 Daucus carota HOM05D003529 ORTHO05D004106 5.2e-14 82.0 165 32.7
Nitab4.5_0000116g0160 Nicotiana tabacum HOM05D003529 ORTHO05D004106 5.2e-14 82.0 155 39.4
AT3G62650 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 6.8e-14 81.6 169 37.3
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 6.8e-14 81.6 171 38.6
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 6.8e-14 81.6 171 38.6
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 6.8e-14 81.6 171 38.6
Sabra14G0092800 Salix brachista HOM05D003529 ORTHO05D004106 6.8e-14 81.6 157 40.1
Sed0025326 Sechium edule HOM05D003529 ORTHO05D004106 6.8e-14 81.6 164 39.0
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 8.9e-14 81.3 144 43.8
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 8.9e-14 81.3 154 38.3
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 8.9e-14 81.3 148 39.9
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 8.9e-14 81.3 148 39.9
Sabra02G0158400 Salix brachista HOM05D003529 ORTHO05D004106 8.9e-14 81.3 159 37.1
CDE05G0935 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.2e-13 80.9 160 36.9
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 1.2e-13 80.9 174 37.9
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 1.2e-13 80.9 156 37.2
Solyc06g009770.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 1.2e-13 80.9 170 35.9
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 1.5e-13 80.5 145 38.6
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 2.6e-13 79.7 170 37.6
FvH4_5g28940 Fragaria vesca HOM05D003529 ORTHO05D004106 3.4e-13 79.3 154 35.7
unitig_85.g27172 Utricularia gibba HOM05D002424 ORTHO05D002640 3.4e-13 79.3 161 37.9
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 5.8e-13 78.6 146 41.1
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 5.8e-13 78.6 144 43.8
Psat3g020880 Pisum sativum HOM05D003529 ORTHO05D004106 5.8e-13 78.6 161 35.4
Potri.002G200000 Populus trichocarpa HOM05D003529 ORTHO05D004106 5.8e-13 78.6 186 33.9
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 7.5e-13 78.2 169 40.2
Potri.014G124900 Populus trichocarpa HOM05D003529 ORTHO05D004106 7.5e-13 78.2 157 38.9
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 9.8e-13 77.8 144 44.4
HanXRQChr10g0285441 Helianthus annuus HOM05D003529 ORTHO05D004106 9.8e-13 77.8 168 30.4
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 9.8e-13 77.8 178 32.6
Phvul.001G211200 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 1.3e-12 77.4 180 36.1
BcaB02g08109 Brassica carinata HOM05D003529 ORTHO05D004106 2.2e-12 76.6 143 42.0
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 2.2e-12 76.6 171 37.4
Psat3g124960 Pisum sativum HOM05D003529 ORTHO05D004106 2.2e-12 76.6 178 33.1
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.2e-12 76.6 161 38.5
FAN04G1108 Fragaria x ananassa HOM05D003529 ORTHO05D004106 2.9e-12 76.3 155 36.8
Sopen06g004400 Solanum pennellii HOM05D003529 ORTHO05D004106 2.9e-12 76.3 101 44.6
Thhalv10006300m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 3.7e-12 75.9 170 35.9
PSO675G3938 Papaver somniferum HOM05D003529 ORTHO05D004106 4.9e-12 75.5 165 42.4
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 4.9e-12 75.5 149 42.3
PGSC0003DMG400007290 Solanum tuberosum HOM05D003529 ORTHO05D004106 4.9e-12 75.5 157 35.7
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 6.4e-12 75.1 144 42.4
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 6.4e-12 75.1 143 41.3
Sed0002432 Sechium edule HOM05D003529 ORTHO05D004106 6.4e-12 75.1 157 35.7
Aqoxy2G02834 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 8.3e-12 74.7 162 38.3
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 8.3e-12 74.7 155 37.4
BolC4t28764H Brassica oleracea HOM05D003529 ORTHO05D004106 1.1e-11 74.3 145 40.0
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.1e-11 74.3 153 35.9
A05p00440 Brassica napus HOM05D003529 ORTHO05D004106 1.9e-11 73.6 144 41.0
BraA05t19042Z Brassica rapa HOM05D003529 ORTHO05D004106 1.9e-11 73.6 144 41.0
C04p00390 Brassica napus HOM05D003529 ORTHO05D004106 2.4e-11 73.2 144 40.3
Carub.0004s3022 Capsella rubella HOM05D003529 ORTHO05D004106 2.4e-11 73.2 144 41.0
HanXRQChr04g0114591 Helianthus annuus HOM05D003529 ORTHO05D004106 3.2e-11 72.8 157 33.1
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 3.2e-11 72.8 144 42.4
TAR365G1145 Trochodendron aralioides HOM05D003529 ORTHO05D004106 3.2e-11 72.8 160 35.0
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 4.1e-11 72.4 170 37.1
PSO063G5106 Papaver somniferum HOM05D003529 ORTHO05D004106 4.1e-11 72.4 160 35.0
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 5.4e-11 72.0 170 37.6
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 5.4e-11 72.0 144 40.3
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 5.4e-11 72.0 170 37.6
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 9.2e-11 71.2 174 36.8
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 1.2e-10 70.9 174 36.8
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 1.2e-10 70.9 174 36.8
Zm00001eb339950 Zea mays HOM05D003529 ORTHO05D004106 1.2e-10 70.9 162 38.3
Glyma.03G217700 Glycine max HOM05D003529 ORTHO05D004106 1.6e-10 70.5 162 35.8
Aa31LG1G28790 Aethionema arabicum HOM05D003529 ORTHO05D004106 2.7e-10 69.7 145 38.6
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 2.7e-10 69.7 158 35.4
SHI19869 Sapria himalayana HOM05D000024 ORTHO05D000007 2.7e-10 69.7 146 32.9
HanXRQChr04g0121431 Helianthus annuus HOM05D003529 ORTHO05D004106 3.5e-10 69.3 161 29.8
PSO541G3234 Papaver somniferum HOM05D003529 ORTHO05D004106 3.5e-10 69.3 158 43.0
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 4.6e-10 68.9 146 34.2
TWI36G0365 Tripterygium wilfordii HOM05D003529 ORTHO05D004106 6.0e-10 68.6 101 45.5
A04p34950 Brassica napus HOM05D003529 ORTHO05D004106 7.8e-10 68.2 146 37.0
BraSC79t46685Z Brassica rapa HOM05D003529 ORTHO05D004106 7.8e-10 68.2 146 37.0
BcaB02g08767 Brassica carinata HOM05D003529 ORTHO05D004106 1.7e-09 67.0 148 39.9
Zm00001eb339960 Zea mays HOM05D003529 ORTHO05D004106 1.7e-09 67.0 161 38.5
ECA248G1804 Erigeron canadensis HOM05D003529 ORTHO05D004106 2.3e-09 66.6 183 30.6
Ca_29579_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 3.0e-09 66.2 158 32.3
Lj1g0023980 Lotus japonicus HOM05D003529 ORTHO05D004106 3.9e-09 65.9 158 32.9
Zm00001eb130390 Zea mays HOM05D003529 ORTHO05D004106 5.0e-09 65.5 162 32.7
BcaB06g29439 Brassica carinata HOM05D003529 ORTHO05D004106 6.6e-09 65.1 146 37.0
VMungo1383G3047 Vigna mungo HOM05D003529 ORTHO05D004106 6.6e-09 65.1 162 35.2
THA.LOC104802191 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 8.6e-09 64.7 142 35.2
Lsat_1_v5_gn_9_601 Lactuca sativa HOM05D003529 ORTHO05D004106 1.1e-08 64.3 157 35.0
Rhsim13G0007600 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.9e-08 63.5 150 34.7
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 2.5e-08 63.2 160 34.4
TWI18G0446 Tripterygium wilfordii HOM05D003529 ORTHO05D004106 3.3e-08 62.8 111 39.6
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 4.3e-08 62.4 151 33.1
Lalb_Chr02g0146621 Lupinus albus HOM05D003529 ORTHO05D004106 5.6e-08 62.0 161 33.5
Medtr7g109220 Medicago truncatula HOM05D003529 ORTHO05D004106 7.3e-08 61.6 165 28.5
TAR362G0595 Trochodendron aralioides HOM05D003529 ORTHO05D004106 1.2e-07 60.8 159 34.6
Eucgr.H01074 Eucalyptus grandis HOM05D003529 ORTHO05D004106 1.6e-07 60.5 157 29.9
PGR044G1489 Punica granatum HOM05D003529 ORTHO05D004106 3.6e-07 59.3 159 34.0
Lalb_Chr18g0046821 Lupinus albus HOM05D003529 ORTHO05D004106 6.2e-07 58.5 160 33.1
SEGI_10792 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 1.8e-06 57.0 152 36.2
BcaC02g06977 Brassica carinata HOM05D003529 ORTHO05D004106 2.3e-06 56.6 132 37.1
C04p72830 Brassica napus HOM05D003529 ORTHO05D004106 2.3e-06 56.6 132 37.1
Sabra16G0234400 Salix brachista HOM05D003529 ORTHO05D004106 3.1e-06 56.2 114 36.8
SEGI_27005 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 8.9e-06 54.7 98 39.8


User provided reference genes

Program Settings