Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 7.4e-33 143.3 72 100.0
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 7.4e-33 143.3 72 100.0
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 8.4e-29 129.8 73 93.2
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.2e-27 125.9 65 95.4
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 3.0e-26 121.3 72 87.5
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 4.8e-24 114.0 69 79.7
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 8.2e-24 113.2 65 83.1
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 1.4e-23 112.5 72 77.8
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 5.3e-23 110.5 72 75.0
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.9e-23 110.2 70 80.0
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.0e-23 109.8 68 80.9
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 9.0e-23 109.8 69 75.4
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.2e-22 109.4 68 77.9
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.5e-22 109.0 65 80.0
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.0e-22 108.6 68 76.5
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.0e-22 108.6 68 76.5
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.0e-22 108.6 69 75.4
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.0e-22 108.6 65 78.5
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.6e-22 108.2 68 76.5
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.6e-22 108.2 70 78.6
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 3.4e-22 107.8 72 73.6
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.5e-22 107.5 72 73.6
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.8e-22 107.1 68 75.0
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 7.6e-22 106.7 70 74.3
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 7.6e-22 106.7 72 76.4
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.0e-21 106.3 68 73.5
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.3e-21 105.9 68 76.5
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 68 75.0
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 1.7e-21 105.5 68 73.5
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.7e-21 105.5 72 70.8
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 1.7e-21 105.5 72 76.4
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.2e-21 105.1 68 72.1
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 2.2e-21 105.1 58 84.5
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 2.9e-21 104.8 74 73.0
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 2.9e-21 104.8 65 75.4
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.9e-21 104.8 70 72.9
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 3.8e-21 104.4 71 74.6
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 3.8e-21 104.4 71 74.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 5.0e-21 104.0 69 73.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 5.0e-21 104.0 68 75.0
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 5.0e-21 104.0 68 73.5
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 5.0e-21 104.0 72 75.0
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 8.4e-21 103.2 59 83.1
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.1e-20 102.8 69 72.5
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.4e-20 102.4 70 75.7
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.4e-20 102.4 70 72.9
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.4e-20 102.4 70 72.9
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.4e-20 102.4 69 75.4
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 2.5e-20 101.7 74 71.6
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 2.5e-20 101.7 74 71.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 2.5e-20 101.7 70 71.4
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.5e-20 101.7 70 71.4
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.5e-20 101.7 70 71.4
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 2.5e-20 101.7 67 77.6
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.5e-20 101.7 65 75.4
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 3.2e-20 101.3 70 71.4
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 3.2e-20 101.3 60 76.7
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 3.2e-20 101.3 69 72.5
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 4.2e-20 100.9 69 75.4
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 68.1
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 68.1
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 68.1
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 68.1
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 68.1
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 5.5e-20 100.5 69 72.5
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 5.5e-20 100.5 64 76.6
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 5.5e-20 100.5 61 80.3
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 7.1e-20 100.1 60 75.0
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 9.3e-20 99.8 61 73.8
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 9.3e-20 99.8 75 70.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 9.3e-20 99.8 75 70.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 9.3e-20 99.8 75 70.7
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 9.3e-20 99.8 67 71.6
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.2e-19 99.4 72 70.8
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 1.6e-19 99.0 69 71.0
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.1e-19 98.6 60 75.0
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 2.1e-19 98.6 69 71.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 2.7e-19 98.2 72 72.2
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 3.5e-19 97.8 61 77.0
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 3.5e-19 97.8 61 77.0
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 3.5e-19 97.8 61 77.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 3.5e-19 97.8 61 77.0
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.6e-19 97.4 72 68.1
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 4.6e-19 97.4 68 69.1
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 6.1e-19 97.1 66 71.2
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 7.9e-19 96.7 69 69.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.3e-18 95.9 69 68.1
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-18 95.9 68 69.1
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-18 95.9 68 69.1
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.8e-18 95.5 68 66.2
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.8e-18 95.5 70 64.3
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.0e-18 94.7 69 66.7
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 8.7e-18 93.2 68 66.2
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 1.1e-17 92.8 65 64.6
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 3.3e-17 91.3 70 65.7
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 4.3e-17 90.9 59 69.5
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 7.4e-17 90.1 64 70.3
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 7.4e-17 90.1 65 66.2
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 3.7e-16 87.8 59 72.9
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 6.3e-16 87.0 64 73.4
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 8.2e-16 86.7 50 78.0
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 1.8e-15 85.5 59 71.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 6.9e-15 83.6 62 71.0
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 1.7e-13 79.0 61 62.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 3.7e-08 61.2 59 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 2.6e-06 55.1 69 37.7
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 7.7e-06 53.5 49 55.1


User provided reference genes

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