Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.7e-227 792.3 400 100.0
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.6e-198 694.9 397 85.6
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 4.5e-188 661.4 396 82.3
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.1e-185 652.5 366 89.1
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-181 640.2 399 79.9
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.4e-181 639.8 396 79.5
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.1e-181 638.3 399 78.2
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 5.3e-181 637.9 399 79.4
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 9.0e-181 637.1 399 78.2
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.0e-180 636.0 398 78.6
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.6e-180 635.6 399 78.7
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.4e-180 635.2 398 78.6
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 5.8e-180 634.4 399 78.7
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 7.6e-180 634.0 399 78.2
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 1.3e-179 633.3 398 78.9
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.7e-179 632.9 399 78.7
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 5.0e-179 631.3 392 80.4
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 79.2
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.1e-178 630.2 398 77.6
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.4e-178 629.8 397 77.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.4e-178 629.8 397 77.6
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.9e-178 629.4 398 76.4
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.2e-178 628.6 398 78.1
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 4.2e-178 628.2 398 75.6
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 5.5e-178 627.9 398 77.4
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 7.1e-178 627.5 398 77.4
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 9.3e-178 627.1 396 78.5
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 9.3e-178 627.1 398 76.4
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.2e-177 626.7 396 76.8
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.6e-177 626.3 398 76.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 2.1e-177 625.9 398 77.4
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.7e-177 625.5 396 77.0
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 2.7e-177 625.5 398 77.1
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.7e-177 625.5 398 76.6
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.5e-177 625.2 313 98.7
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 7.9e-177 624.0 396 77.0
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 7.9e-177 624.0 402 77.6
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.3e-176 623.2 396 77.8
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.3e-176 622.5 396 76.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.9e-176 621.7 398 76.9
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.9e-176 621.7 398 77.6
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 6.7e-176 620.9 398 78.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 8.7e-176 620.5 399 77.2
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.1e-175 620.2 398 76.1
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.5e-175 619.8 397 77.8
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.3e-175 618.6 398 74.6
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.6e-174 616.3 398 75.1
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.6e-174 616.3 396 77.8
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.2e-174 615.9 401 76.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.2e-174 615.9 398 77.4
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.7e-174 615.1 393 78.1
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 4.8e-174 614.8 398 76.1
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 8.2e-174 614.0 396 76.0
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.1e-173 613.6 398 76.1
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.4e-173 613.2 410 75.4
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.4e-173 613.2 396 76.5
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.8e-173 612.8 396 76.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.8e-173 612.8 399 77.4
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.8e-173 612.8 422 72.7
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.4e-173 612.5 397 76.8
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.1e-173 612.1 396 77.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 3.1e-173 612.1 396 77.3
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 5.3e-173 611.3 399 73.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-172 610.1 396 76.8
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.2e-172 610.1 396 76.8
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.2e-172 610.1 403 75.4
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.5e-172 609.8 396 76.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.5e-172 609.8 397 76.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.6e-172 609.0 400 76.2
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-172 608.6 397 76.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.0e-171 607.1 376 79.3
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-171 606.7 396 76.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.3e-171 606.7 400 76.0
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.7e-171 606.3 395 76.5
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 2.2e-171 605.9 377 79.3
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.9e-171 605.5 396 75.8
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.8e-171 605.1 396 76.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 5.0e-171 604.7 396 76.0
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 6.5e-171 604.4 400 76.0
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 8.5e-171 604.0 377 79.3
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.4e-170 603.2 395 76.2
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.9e-170 602.8 399 74.7
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.9e-170 602.8 399 74.2
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 2.5e-170 602.4 400 74.2
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 2.5e-170 602.4 396 75.8
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.5e-170 602.4 395 76.2
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.5e-170 602.4 391 77.2
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 4.2e-170 601.7 398 76.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 5.5e-170 601.3 396 75.5
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 5.5e-170 601.3 430 70.9
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 9.4e-170 600.5 376 78.5
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.1e-169 599.4 396 75.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 4.6e-169 598.2 396 76.0
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.6e-169 598.2 396 74.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 6.7e-168 594.3 394 75.9
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 3.3e-167 592.0 417 71.9
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 5.7e-167 591.3 394 75.6
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.7e-166 588.6 399 73.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.1e-165 585.1 498 62.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 5.3e-165 584.7 403 74.4
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 9.1e-165 583.9 395 73.2
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.6e-164 582.4 441 68.5
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 4.5e-164 581.6 410 72.0
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.9e-163 578.9 442 68.3
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 5.0e-163 578.2 415 69.6
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.4e-162 576.6 384 75.5
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.2e-161 573.5 402 73.4
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.0e-160 570.5 396 71.7
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.0e-160 568.9 399 72.7
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.9e-160 568.5 452 66.8
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.2e-153 547.0 352 78.7
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.7e-153 545.8 551 55.2
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.1e-153 544.7 398 68.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 9.1e-141 504.2 327 78.6
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.0e-136 490.7 316 79.7
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.0e-131 474.2 290 77.6
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.5e-130 469.5 315 76.2
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 6.8e-120 434.9 350 66.9
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.1e-117 427.6 391 55.5
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.5e-114 416.4 286 76.6
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.3e-114 416.0 364 54.7
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.2e-113 414.1 393 53.7
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 8.3e-110 401.4 344 55.2
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.2e-97 360.9 349 52.1
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.2e-93 345.9 236 77.5
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.8e-81 306.6 284 50.7
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 2.4e-80 303.5 223 65.9
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.3e-78 297.7 334 45.8
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 3.0e-67 260.0 346 39.0
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 3.8e-62 243.0 351 41.0
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.3e-59 234.6 229 57.6
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 3.1e-56 223.4 204 62.7
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.0e-54 218.4 171 69.0
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 2.9e-54 216.9 268 49.3
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.7e-44 183.7 98 91.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.4e-32 144.8 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.8e-32 144.4 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.0e-30 138.7 137 57.7
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.4e-24 117.5 81 66.7
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 8.0e-20 102.4 105 48.6
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.0e-18 97.8 62 67.7
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.5e-15 87.0 62 71.0
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 2.0e-10 71.2 53 66.0
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.3e-06 58.5 265 25.7
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.7e-06 58.2 41 73.2
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 3.0e-06 57.4 315 24.1
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 3.9e-06 57.0 257 24.5
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 3.9e-06 57.0 315 24.1
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 8.6e-06 55.8 35 74.3


User provided reference genes

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