Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 0.0e+00 1224.2 625 100.0
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.3e-286 987.6 685 79.3
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.5e-206 723.4 610 66.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 9.2e-172 607.8 654 55.4
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 7.5e-166 588.2 630 54.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 9.6e-137 491.5 645 48.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 7.6e-126 455.3 644 43.9
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 6.4e-125 452.2 673 41.3
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.3e-122 444.5 660 44.8
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.3e-122 444.5 633 45.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.3e-122 444.5 697 41.8
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.3e-122 443.7 656 43.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.0e-122 443.4 660 44.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.7e-122 442.2 662 43.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.1e-121 441.4 646 43.7
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 3.3e-121 439.9 651 44.2
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.3e-121 439.9 660 42.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.3e-121 439.5 518 51.4
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.4e-119 434.5 652 43.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.8e-117 426.4 638 44.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 3.8e-117 426.4 658 42.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.2e-116 423.3 660 42.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.2e-116 422.9 671 42.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.7e-115 420.2 660 43.2
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-114 418.3 683 41.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 8.7e-114 415.2 683 40.8
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.3e-113 413.3 654 41.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 9.6e-113 411.8 668 41.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.4e-111 407.1 657 41.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.0e-111 406.4 639 42.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.6e-110 403.7 648 40.9
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.8e-110 402.5 684 40.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.2e-109 400.6 641 41.7
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-108 398.3 598 42.1
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.6e-107 394.4 684 38.9
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 3.5e-107 393.3 683 38.8
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.9e-106 389.8 649 41.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.7e-104 383.3 647 38.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 6.3e-104 382.5 659 39.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 4.1e-103 379.8 685 39.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.2e-100 370.2 654 40.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-99 367.9 596 39.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.1e-99 367.5 639 40.1
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.7e-99 367.1 652 37.3
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.6e-99 366.7 640 40.0
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 7.9e-99 365.5 654 40.1
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.0e-98 365.2 638 38.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 8.8e-98 362.1 642 39.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.1e-97 361.7 654 39.0
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.4e-97 359.0 722 37.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.7e-96 357.8 623 37.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.8e-96 356.3 618 37.9
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.8e-96 356.3 637 38.3
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 6.3e-96 355.9 643 38.6
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 6.3e-96 355.9 634 39.7
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.3e-96 355.9 494 44.5
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.2e-96 355.5 673 38.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.1e-95 353.2 661 39.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.3e-95 352.8 675 37.8
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 6.9e-95 352.4 632 37.7
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.5e-94 351.3 623 37.9
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.0e-94 350.9 621 38.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.6e-94 350.5 632 37.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 5.9e-94 349.4 628 36.9
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 7.7e-94 349.0 650 38.0
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.7e-93 347.8 315 60.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.4e-92 344.7 648 36.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.5e-92 344.0 627 39.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.2e-92 343.6 656 37.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.2e-91 341.7 572 39.5
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.6e-91 340.1 611 38.1
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 7.9e-91 339.0 653 38.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 3.0e-90 337.0 662 40.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.7e-90 335.9 561 39.9
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-89 335.1 648 38.3
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.5e-89 334.7 661 37.2
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.6e-89 334.0 661 37.2
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 9.7e-89 332.0 662 37.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-88 330.9 563 40.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 4.8e-88 329.7 617 38.6
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 6.3e-88 329.3 633 36.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-87 327.8 186 92.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 9.1e-87 325.5 656 37.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.5e-86 324.7 639 38.3
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 7.7e-86 322.4 629 35.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.2e-85 320.9 647 35.9
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.9e-85 320.5 563 39.1
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.8e-85 320.1 630 37.0
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.5e-84 316.2 626 35.1
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 2.1e-83 314.3 646 34.8
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.8e-80 303.9 470 42.8
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.6e-78 298.1 660 34.5
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.6e-78 297.4 632 33.7
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.9e-78 296.2 646 35.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.2e-77 294.3 461 40.6
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.5e-77 292.7 440 42.7
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.5e-76 290.8 646 36.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.2e-76 290.0 646 35.0
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 4.0e-74 283.5 631 33.1
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.1e-71 273.5 524 37.4
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 7.0e-71 272.7 493 37.7
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 9.1e-71 272.3 651 32.4
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.3e-66 257.7 518 36.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.8e-66 256.1 636 33.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.5e-65 255.0 306 47.7
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 9.1e-63 245.7 480 34.6
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 5.0e-61 240.0 695 33.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.3e-60 237.3 665 30.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.2e-60 236.1 603 32.3
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 1.6e-59 235.0 681 33.0
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.1e-59 233.0 615 31.9
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.3e-58 231.1 506 34.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 6.8e-58 229.6 552 34.6
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-57 228.8 654 31.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-57 228.8 654 31.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.4e-55 221.9 657 30.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.4e-55 219.9 366 38.8
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.7e-54 217.6 451 35.0
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-50 205.7 355 38.0
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.5e-49 201.8 462 34.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.3e-45 188.7 429 32.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.5e-44 185.3 517 30.4
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-43 182.2 616 29.5
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.5e-36 157.9 226 38.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.0e-34 150.6 196 42.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.2e-34 150.2 431 31.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.2e-32 144.8 302 34.8
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.9e-32 144.4 374 28.3
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 6.6e-29 133.3 448 28.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.5e-28 131.3 240 38.8
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.6e-27 128.6 280 33.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 9.9e-25 119.4 284 34.5
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 3.2e-23 114.4 168 45.8
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.2e-23 114.0 280 33.2
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.5e-22 110.9 203 37.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.9e-21 107.5 63 76.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.6e-20 102.8 254 35.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-19 101.7 330 28.2
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.6e-19 100.9 248 35.5
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 6.2e-19 100.1 221 33.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.6e-17 94.7 184 38.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.4e-15 89.0 283 29.0
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.4e-15 88.2 182 33.5
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 2.7e-14 84.7 139 44.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 7.8e-14 83.2 156 39.7
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 7.8e-14 83.2 408 25.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.9e-13 80.9 70 65.7
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.1e-12 79.3 196 34.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 3.3e-12 77.8 144 37.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.8e-11 73.9 54 61.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.8e-11 73.9 100 44.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 4.0e-10 70.9 135 37.8
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 7.6e-09 66.6 43 65.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.9e-07 62.0 82 45.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.4e-07 61.6 56 50.0


User provided reference genes

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