Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.2e-264 914.4 567 100.0
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.5e-225 783.9 540 93.7
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.4e-198 696.8 404 88.6
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 6.8e-182 641.3 575 76.2
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.9e-177 625.9 567 76.0
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.2e-166 588.6 571 61.5
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.4e-163 580.5 567 70.7
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 9.3e-131 471.5 571 64.1
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 4.1e-118 429.5 533 63.6
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 3.4e-117 426.4 551 60.1
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 1.4e-115 421.0 585 59.3
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.1e-112 411.4 503 64.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.4e-110 403.7 546 59.9
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 4.2e-107 392.9 595 51.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.0e-105 388.3 447 65.8
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.8e-105 387.5 479 63.9
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.8e-105 387.5 533 60.2
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 8.8e-105 385.2 452 60.4
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 4.3e-104 382.9 475 62.7
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 8.2e-103 378.6 578 57.3
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 8.2e-103 378.6 578 57.3
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 8.2e-103 378.6 523 60.0
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 4.1e-102 376.3 548 56.2
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 5.3e-102 375.9 549 56.5
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.5e-101 374.4 499 60.1
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.0e-101 374.0 451 64.3
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.0e-101 374.0 533 58.5
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 2.0e-101 374.0 541 56.0
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.0e-100 371.7 466 64.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 2.2e-100 370.5 541 56.0
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 5.0e-100 369.4 533 58.9
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 6.5e-100 369.0 469 61.2
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 7.2e-99 365.5 533 58.7
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 3.6e-98 363.2 454 64.5
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 7.9e-98 362.1 443 64.1
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.0e-97 361.7 551 54.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.8e-97 360.9 593 38.8
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 2.3e-97 360.5 446 63.0
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 3.0e-97 360.1 526 58.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 3.9e-97 359.8 472 62.7
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 5.1e-97 359.4 526 58.4
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 6.7e-97 359.0 537 57.7
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 2.0e-96 357.5 446 63.2
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 2.6e-96 357.1 450 64.0
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 7.4e-96 355.5 448 63.4
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 7.4e-96 355.5 545 55.8
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 2.2e-95 354.0 548 54.7
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.8e-94 350.9 523 57.9
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.8e-94 350.9 457 63.5
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 5.3e-94 349.4 538 57.4
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 9.1e-94 348.6 442 45.5
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 9.1e-94 348.6 541 55.1
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.0e-93 347.4 522 58.2
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 3.5e-93 346.7 531 57.1
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 7.7e-93 345.5 362 52.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 2.9e-92 343.6 446 57.6
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 5.0e-92 342.8 543 57.5
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 7.2e-91 339.0 562 48.2
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.6e-90 337.8 567 53.3
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.1e-90 337.4 544 57.2
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.0e-89 335.1 482 60.4
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.0e-89 335.1 568 54.4
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 4.0e-89 333.2 559 55.6
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 2.0e-88 330.9 547 53.2
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 2.6e-88 330.5 561 49.9
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 7.5e-88 328.9 492 58.1
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.1e-86 325.1 528 53.6
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.2e-85 321.6 419 42.5
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 1.6e-85 321.2 540 54.4
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.5e-85 319.7 536 55.6
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 5.9e-85 319.3 419 42.2
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.3e-84 318.2 564 51.8
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 8.5e-84 315.5 456 57.9
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 7.2e-83 312.4 454 60.4
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 9.4e-83 312.0 562 50.9
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.6e-82 311.2 467 57.4
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.4e-81 308.1 557 51.2
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 4.0e-81 306.6 500 57.0
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 4.0e-81 306.6 464 57.1
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 6.8e-81 305.8 376 45.5
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-79 301.6 502 42.0
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 4.8e-79 299.7 493 55.8
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 8.3e-79 298.9 472 57.2
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 9.1e-78 295.4 565 49.7
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 5.0e-76 289.7 566 50.7
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 1.5e-75 288.1 449 56.1
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.6e-74 284.6 557 50.6
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.6e-74 284.6 538 52.6
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 8.0e-74 282.3 575 49.4
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.2e-72 278.5 554 50.7
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 3.4e-72 276.9 568 50.2
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 5.7e-72 276.2 561 49.6
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 4.9e-71 273.1 497 53.3
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.4e-70 271.6 393 42.2
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 5.4e-70 269.6 533 49.9
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.7e-68 264.6 499 40.5
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.3e-68 264.2 548 50.4
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 2.5e-67 260.8 501 43.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 3.3e-67 260.4 529 52.2
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 5.6e-67 259.6 495 53.5
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 7.3e-67 259.2 490 35.9
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.2e-66 258.5 529 52.0
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 1.3e-63 248.4 534 50.2
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 1.3e-63 248.4 534 50.2
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 1.7e-63 248.1 554 50.7
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 3.2e-62 243.8 531 50.5
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 4.1e-62 243.4 356 43.8
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.2e-55 221.1 261 44.8
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 5.4e-54 216.5 426 35.0
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 2.3e-52 211.1 488 47.7
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 2.7e-45 187.6 438 45.0
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 6.6e-44 183.0 286 40.9
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 2.7e-37 161.0 446 43.9
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.8e-33 148.3 74 98.6
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 3.8e-31 140.6 178 43.3
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 2.9e-23 114.4 311 29.3
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.1e-21 108.2 315 30.5
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.7e-21 107.8 321 30.5
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.3e-20 104.8 322 28.9
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 6.2e-18 96.7 67 68.7
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 3.1e-17 94.4 71 60.6
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-15 88.6 143 37.1
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-15 88.6 143 37.1
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-14 85.5 111 42.3
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.4e-14 85.5 176 31.2
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 4.2e-14 84.0 67 64.2
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 9.3e-14 82.8 203 31.0
DCAR_027464 Daucus carota HOM05D005622 ORTHO05D002854 1.6e-10 72.0 283 22.6
CANSAT54G2964 Cannabis sativa HOM05D007661 ORTHO05D009671 2.8e-10 71.2 185 23.8
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.7e-10 70.9 303 22.1
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 3.1e-09 67.8 194 25.8
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 4.0e-09 67.4 154 29.9
AL6G29620 Arabidopsis lyrata HOM05D007661 ORTHO05D009671 5.3e-09 67.0 167 25.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 5.3e-09 67.0 192 31.2
AT5G18390 Arabidopsis thaliana HOM05D007661 ORTHO05D009671 6.9e-09 66.6 167 25.7
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 1.2e-08 65.9 299 22.1
Carub.0006s1665 Capsella rubella HOM05D007661 ORTHO05D009671 1.5e-08 65.5 167 25.1
CARHR194640 Cardamine hirsuta HOM05D007661 ORTHO05D009671 2.0e-08 65.1 167 24.6
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 2.0e-08 65.1 171 27.5
Manes.09G145300 Manihot esculenta HOM05D007661 ORTHO05D009671 3.4e-08 64.3 179 23.5
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 3.4e-08 64.3 48 62.5
Aa31LG11G11280 Aethionema arabicum HOM05D007661 ORTHO05D009671 4.5e-08 63.9 160 25.0
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 4.5e-08 63.9 66 43.9
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 5.8e-08 63.5 274 21.9
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 7.6e-08 63.2 150 27.3
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.0e-07 62.8 177 26.6
Sp6g25930 Schrenkiella parvula HOM05D007661 ORTHO05D009671 1.0e-07 62.8 158 25.3
MELO3C011426.2 Cucumis melo HOM05D005622 ORTHO05D002854 1.3e-07 62.4 321 21.2
ECA246G3879 Erigeron canadensis HOM05D005622 ORTHO05D002854 1.3e-07 62.4 297 21.5
Potri.019G025700 Populus trichocarpa HOM05D007661 ORTHO05D009671 1.3e-07 62.4 198 24.2
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.3e-07 62.4 355 19.4
Hund20691 Selenicereus undatus HOM05D000424 ORTHO05D000355 1.3e-07 62.4 166 27.1
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 1.3e-07 62.4 70 41.4
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 1.7e-07 62.0 153 26.1
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 2.2e-07 61.6 194 28.4
Thhalv10013477m.g Eutrema salsugineum HOM05D007661 ORTHO05D009671 2.2e-07 61.6 158 25.3
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 2.9e-07 61.2 154 27.3
BcaB01g05190 Brassica carinata HOM05D007661 ORTHO05D009671 2.9e-07 61.2 158 25.3
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 3.8e-07 60.8 286 21.3
Cpa.g.sc65.121 Carica papaya HOM05D000424 ORTHO05D000355 3.8e-07 60.8 231 22.9
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 4.9e-07 60.5 237 22.8
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 6.5e-07 60.1 88 37.5
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 6.5e-07 60.1 303 20.8
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 6.5e-07 60.1 133 29.3
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 8.4e-07 59.7 214 22.4
BcaNung04935 Brassica carinata HOM05D007661 ORTHO05D009671 8.4e-07 59.7 158 24.1
A03p08810 Brassica napus HOM05D007661 ORTHO05D009671 8.4e-07 59.7 174 24.1
C03p10300 Brassica napus HOM05D007661 ORTHO05D009671 1.1e-06 59.3 174 24.1
BraA03t10206Z Brassica rapa HOM05D007661 ORTHO05D009671 1.1e-06 59.3 174 24.1
HanXRQChr12g0375311 Helianthus annuus HOM05D005622 ORTHO05D002854 1.1e-06 59.3 269 22.3
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.4e-06 58.9 154 27.3
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.9e-06 58.5 251 21.5
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 2.5e-06 58.2 208 25.0
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 2.5e-06 58.2 208 25.0
arahy.Tifrunner.gnm1.ann1.TA9010 Arachis hypogaea HOM05D000424 ORTHO05D000355 2.5e-06 58.2 150 25.3
BolC3t13510H Brassica oleracea HOM05D007661 ORTHO05D009671 2.5e-06 58.2 174 23.6
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 2.5e-06 58.2 178 25.8
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 2.5e-06 58.2 203 23.6
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 4.2e-06 57.4 239 25.1
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 7.1e-06 56.6 359 20.1
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 9.3e-06 56.2 359 20.1
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 9.3e-06 56.2 359 20.3
FAN12G0629 Fragaria x ananassa HOM05D005622 ORTHO05D002854 9.3e-06 56.2 285 21.8


User provided reference genes

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