Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.3e-134 481.9 270 100.0
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.6e-128 463.0 245 98.4
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 4.2e-97 358.6 288 67.7
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 3.0e-87 325.9 278 66.2
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 1.4e-68 263.8 281 56.6
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 7.0e-60 235.0 294 50.3
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 3.5e-59 232.6 230 59.1
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 7.7e-59 231.5 294 51.0
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 7.7e-59 231.5 297 50.2
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 7.7e-59 231.5 297 50.2
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.9e-58 229.6 292 51.0
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 6.5e-58 228.4 238 57.1
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 4.2e-57 225.7 287 49.8
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 1.0e-55 221.1 266 51.9
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.8e-55 220.3 268 51.1
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 4.0e-55 219.2 281 51.2
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 4.0e-55 219.2 287 47.7
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 4.0e-55 219.2 286 50.0
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 5.2e-55 218.8 287 49.8
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 8.8e-55 218.0 281 49.8
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 3.4e-54 216.1 290 46.9
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.4e-54 216.1 290 46.9
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 5.7e-54 215.3 295 47.5
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 9.8e-54 214.5 287 49.1
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.7e-53 212.6 278 48.6
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.7e-53 212.6 278 48.6
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.7e-53 212.6 278 48.6
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 8.3e-53 211.5 278 47.5
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.4e-52 210.7 293 49.1
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 2.4e-52 209.9 288 49.3
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 4.1e-52 209.1 264 48.5
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 7.0e-52 208.4 258 48.4
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 7.0e-52 208.4 293 46.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 7.0e-52 208.4 294 47.3
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 7.0e-52 208.4 290 46.6
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.6e-51 207.2 246 50.0
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 5.9e-51 205.3 259 49.0
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 5.9e-51 205.3 259 49.0
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 5.9e-51 205.3 259 49.0
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 5.9e-51 205.3 287 48.1
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 7.7e-51 204.9 264 48.5
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.3e-50 204.1 294 46.9
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.7e-50 203.8 299 45.5
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 2.2e-50 203.4 282 47.2
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 3.8e-50 202.6 262 48.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 3.8e-50 202.6 262 49.6
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 6.5e-50 201.8 265 48.3
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 6.5e-50 201.8 299 44.8
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 6.5e-50 201.8 299 44.5
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.5e-49 200.7 265 47.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 1.9e-49 200.3 262 48.5
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.9e-49 200.3 296 44.3
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.9e-49 200.3 201 56.2
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 1.9e-49 200.3 270 48.9
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 2.5e-49 199.9 291 44.7
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 2.5e-49 199.9 300 44.7
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.5e-49 199.9 266 48.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 5.5e-49 198.7 251 47.8
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 5.5e-49 198.7 305 43.6
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 7.2e-49 198.4 265 45.7
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 7.2e-49 198.4 182 56.6
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 9.4e-49 198.0 244 49.6
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.6e-48 197.2 304 44.7
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.6e-48 197.2 204 53.9
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 2.1e-48 196.8 289 44.3
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.1e-48 196.8 270 45.2
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 2.7e-48 196.4 200 52.5
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.7e-48 196.4 289 46.4
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 4.7e-48 195.7 291 46.0
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 4.7e-48 195.7 298 43.6
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 4.7e-48 195.7 256 49.2
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 6.1e-48 195.3 292 44.5
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 6.1e-48 195.3 292 43.5
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 6.1e-48 195.3 281 46.6
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 8.0e-48 194.9 312 41.7
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.0e-47 194.5 197 55.8
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.0e-47 194.5 264 48.1
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.8e-47 193.7 292 44.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.8e-47 193.7 291 46.4
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 3.0e-47 193.0 256 46.1
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.0e-47 193.0 295 43.4
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.0e-47 193.0 272 48.2
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 6.8e-47 191.8 291 44.0
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.2e-46 191.0 261 45.2
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.0e-46 190.3 267 45.3
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 4.4e-46 189.1 217 51.2
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.4e-46 189.1 257 46.3
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.4e-46 189.1 270 47.4
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.4e-46 189.1 270 47.4
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 5.7e-46 188.7 299 42.1
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 7.5e-46 188.3 310 41.9
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.3e-45 187.6 221 49.3
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.3e-45 187.6 293 44.7
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 1.7e-45 187.2 267 44.2
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 1.7e-45 187.2 214 49.5
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 2.2e-45 186.8 311 42.1
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 4.9e-45 185.7 215 49.8
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 6.3e-45 185.3 284 43.7
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 8.3e-45 184.9 294 43.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.1e-44 184.5 279 43.4
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.8e-44 183.7 261 46.0
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.1e-44 183.0 299 43.8
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 5.4e-44 182.2 203 50.2
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 7.0e-44 181.8 186 54.3
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.2e-43 181.0 276 47.1
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.2e-43 181.0 207 49.8
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 1.6e-43 180.6 302 42.1
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.0e-42 177.9 198 51.0
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 6.6e-42 175.3 250 47.2
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 2.5e-41 173.3 211 49.8
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 3.6e-40 169.5 250 46.4
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 4.0e-39 166.0 177 52.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 5.2e-39 165.6 330 37.3
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 1.5e-38 164.1 178 51.1
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.9e-37 159.8 238 44.5
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.1e-36 157.9 153 55.6
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 2.4e-36 156.8 194 46.9
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.6e-35 154.1 225 43.6
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 6.6e-34 148.7 159 54.1
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 6.6e-34 148.7 190 44.7
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.5e-33 146.7 184 46.2
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.9e-28 130.6 215 41.4
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 4.1e-28 129.4 200 39.0
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 7.8e-27 125.2 107 61.7
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.3e-26 123.6 218 39.4
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 6.6e-26 122.1 109 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.5e-25 120.9 180 40.0
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 3.3e-25 119.8 193 40.4
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 9.5e-25 118.2 117 56.4
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.2e-24 117.9 166 50.0
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.8e-24 116.7 218 33.0
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 4.7e-24 115.9 107 61.7
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 6.8e-23 112.1 112 58.0
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.9e-20 104.0 164 47.6
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 3.2e-20 103.2 195 35.4
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 1.6e-19 100.9 159 44.7
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.0e-18 98.2 143 36.4
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 5.1e-18 95.9 125 51.2
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 3.1e-15 86.7 64 65.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 5.2e-15 85.9 55 70.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.6e-14 83.6 104 48.1
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 8.4e-13 78.6 60 63.3
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 4.1e-12 76.3 216 29.6
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 4.6e-11 72.8 69 58.0
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 2.3e-10 70.5 47 68.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.6e-10 68.9 141 31.2
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.1e-09 68.2 121 37.2
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 3.3e-09 66.6 109 48.6
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 3.1e-07 60.1 39 69.2
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 3.1e-07 60.1 39 69.2
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 5.8e-06 55.8 126 27.0
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 9.9e-06 55.1 33 72.7


User provided reference genes

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