Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.2e-275 952.6 500 100.0
AUR62037580 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.5e-142 509.2 326 83.7
AUR62002739 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.5e-132 477.2 331 75.2
AUR62008695 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.0e-104 384.8 326 67.5
AUR62043256 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.3e-104 384.4 303 69.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 6.8e-101 372.1 192 98.4
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.9e-96 356.7 192 93.2
AUR62024578 Chenopodium quinoa HOM05D007445 ORTHO05D009408 6.6e-96 355.5 329 60.2
AUR62029211 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.7e-94 349.4 329 59.0
AUR62044591 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.2e-89 334.7 345 53.3
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 5.9e-89 332.4 192 83.9
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.3e-88 331.3 192 82.8
AUR62013452 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.7e-88 330.9 329 55.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 3.9e-88 329.7 192 82.3
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.5e-87 327.8 192 82.3
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.3e-87 326.6 188 83.5
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 4.3e-87 326.2 188 84.0
AUR62017262 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.6e-87 325.9 281 62.3
AUR62003367 Chenopodium quinoa HOM05D007445 ORTHO05D009408 9.5e-87 325.1 344 53.8
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 9.5e-87 325.1 192 81.8
AUR62024294 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.6e-86 324.3 281 61.9
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.1e-86 323.9 192 81.2
AUR62018773 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.1e-86 323.9 321 55.5
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.1e-86 323.9 192 80.7
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.1e-86 323.9 187 82.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 6.1e-86 322.4 192 80.7
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 6.1e-86 322.4 192 80.7
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 8.0e-86 322.0 192 80.2
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 8.0e-86 322.0 192 81.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 1.0e-85 321.6 192 80.2
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 1.0e-85 321.6 192 81.8
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.0e-85 321.6 191 80.1
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.4e-85 321.2 213 73.7
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.4e-85 321.2 192 80.2
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.1e-85 320.1 192 80.7
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.1e-85 320.1 192 80.2
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 4.0e-85 319.7 192 80.7
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 5.2e-85 319.3 192 80.2
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 5.2e-85 319.3 192 80.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.2e-85 319.3 192 80.7
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.2e-85 319.3 192 80.7
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.2e-85 319.3 192 80.2
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 6.8e-85 318.9 192 79.7
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 6.8e-85 318.9 188 80.9
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 6.8e-85 318.9 192 80.2
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 8.9e-85 318.5 196 78.6
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 8.9e-85 318.5 200 78.0
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 8.9e-85 318.5 192 80.2
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.5e-84 317.8 192 81.2
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.5e-84 317.8 192 81.2
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.5e-84 317.8 192 79.2
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.6e-84 317.0 192 79.7
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.6e-84 317.0 192 79.7
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 3.4e-84 316.6 192 79.7
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 3.4e-84 316.6 192 79.2
AUR62034340 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.4e-84 316.6 218 78.9
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 4.4e-84 316.2 192 79.2
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 5.8e-84 315.8 192 78.6
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 5.8e-84 315.8 192 79.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 7.5e-84 315.5 192 79.2
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 7.5e-84 315.5 192 79.2
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 7.5e-84 315.5 196 77.6
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 9.8e-84 315.1 192 78.1
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 9.8e-84 315.1 192 78.6
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.3e-83 314.7 192 79.7
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 1.3e-83 314.7 192 79.2
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 1.3e-83 314.7 192 78.6
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.2e-83 313.9 192 78.1
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 3.7e-83 313.2 192 78.1
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 3.7e-83 313.2 192 77.6
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 3.7e-83 313.2 193 80.8
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 3.7e-83 313.2 192 78.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 6.4e-83 312.4 194 76.8
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 6.4e-83 312.4 192 77.6
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 8.3e-83 312.0 192 77.6
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 3.2e-82 310.1 192 77.6
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.2e-82 310.1 192 78.1
AUR62037116 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.1e-82 309.7 331 54.7
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.1e-82 309.7 196 77.0
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 4.1e-82 309.7 192 77.6
AUR62025946 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.4e-82 309.3 210 78.6
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 7.0e-82 308.9 192 78.1
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-81 307.8 196 77.0
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.0e-81 307.4 207 73.4
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.7e-81 307.0 193 78.2
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 3.5e-81 306.6 192 76.6
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 6.0e-81 305.8 192 76.6
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 6.0e-81 305.8 192 76.0
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 6.0e-81 305.8 192 76.0
AUR62033081 Chenopodium quinoa HOM05D007445 ORTHO05D009408 7.8e-81 305.4 312 53.8
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.0e-80 305.1 192 75.5
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.3e-80 304.7 192 75.5
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.9e-80 303.1 192 77.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 6.6e-80 302.4 192 75.5
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 6.6e-80 302.4 192 76.6
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 8.6e-80 302.0 192 75.5
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 2.5e-79 300.4 186 76.9
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 5.6e-79 299.3 192 76.6
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 9.5e-79 298.5 192 75.0
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 2.1e-78 297.4 190 74.7
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.8e-78 297.0 192 74.5
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 4.7e-78 296.2 192 74.0
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 6.2e-78 295.8 192 73.4
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 6.2e-78 295.8 192 74.0
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 6.2e-78 295.8 192 73.4
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 8.1e-78 295.4 192 72.9
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 8.1e-78 295.4 192 72.9
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.1e-77 295.0 192 76.0
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.4e-77 294.7 192 72.4
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.3e-77 293.9 192 72.9
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 3.1e-77 293.5 193 73.6
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 3.1e-77 293.5 192 73.4
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 6.8e-77 292.4 192 72.9
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 6.8e-77 292.4 192 72.4
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 8.9e-77 292.0 193 73.1
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 8.9e-77 292.0 193 72.0
AUR62029681 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.5e-76 291.2 283 54.4
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.6e-76 290.4 193 73.1
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 4.4e-76 289.7 189 76.7
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.3e-75 288.1 192 75.0
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.3e-75 288.1 192 73.4
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 3.7e-75 286.6 192 72.9
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 6.4e-75 285.8 192 70.8
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 8.3e-75 285.4 192 70.8
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.9e-74 284.3 192 74.0
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 4.1e-74 283.1 192 70.8
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 9.2e-74 282.0 192 74.5
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 2.7e-73 280.4 174 78.2
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 3.9e-72 276.6 275 55.6
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.5e-71 274.6 192 71.9
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 5.6e-71 272.7 192 70.3
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 8.1e-70 268.9 188 65.4
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 2.3e-69 267.3 286 52.4
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 6.8e-69 265.8 168 76.2
AUR62024902 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.4e-68 263.1 284 51.4
AUR62033469 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.8e-68 262.7 241 60.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 9.9e-68 261.9 190 64.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.7e-67 261.2 190 63.7
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 7.1e-66 255.8 192 67.2
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.6e-65 254.6 192 66.7
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 6.0e-65 252.7 192 65.1
AUR62035134 Chenopodium quinoa HOM05D007445 ORTHO05D009408 6.6e-64 249.2 245 58.0
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.1e-63 248.4 192 59.4
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.5e-63 248.1 173 71.1
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.0e-60 237.7 153 73.2
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 2.6e-60 237.3 153 73.2
AUR62040064 Chenopodium quinoa HOM05D007445 ORTHO05D009408 7.1e-58 229.2 274 48.2
AUR62024546 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.7e-57 227.3 185 68.1
AUR62013559 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.6e-55 219.5 240 54.2
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.8e-53 214.5 174 56.9
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 3.1e-53 213.8 137 79.6
AUR62013469 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.6e-52 210.7 236 51.3
AUR62044000 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.8e-52 209.5 207 58.0
AUR62042319 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.1e-49 201.1 146 69.9
AUR62034842 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.3e-46 191.8 278 40.3
AUR62041584 Chenopodium quinoa HOM05D007445 ORTHO05D009408 8.1e-46 189.1 183 60.7
AUR62039558 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.1e-45 187.2 297 37.0
AUR62017205 Chenopodium quinoa HOM05D007445 ORTHO05D009408 9.0e-45 185.7 278 37.8
AUR62014319 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.0e-44 184.5 276 41.3
AUR62022261 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.9e-43 180.6 291 37.8
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.8e-43 180.3 191 53.4
AUR62014731 Chenopodium quinoa HOM05D007445 ORTHO05D009408 6.4e-43 179.5 294 37.1
AUR62038493 Chenopodium quinoa HOM05D007445 ORTHO05D009408 8.4e-43 179.1 114 81.6
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.9e-42 177.9 128 63.3
AUR62003575 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.2e-41 175.3 293 37.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 2.7e-41 174.1 119 65.5
AUR62006939 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.7e-41 174.1 269 41.3
AUR62008706 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.3e-40 171.0 148 58.8
AUR62036395 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.1e-40 169.9 292 37.0
AUR62026405 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.5e-39 168.3 271 38.0
AUR62024956 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.6e-36 157.5 107 69.2
AUR62037590 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.9e-34 151.4 119 59.7
AUR62013080 Chenopodium quinoa HOM05D007445 ORTHO05D009408 7.1e-34 149.4 241 36.5
AUR62008312 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.9e-32 143.7 142 52.1
AUR62018705 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.3e-30 138.7 253 37.2
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 4.1e-29 133.7 184 37.0
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.7e-27 128.3 96 71.9
AUR62014080 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.2e-26 123.6 278 30.6
AUR62041161 Chenopodium quinoa HOM05D007445 ORTHO05D009408 7.2e-26 122.9 160 43.1
AUR62002999 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.3e-23 113.6 145 47.6
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 9.0e-21 105.9 142 40.1
AUR62043694 Chenopodium quinoa HOM05D007445 ORTHO05D009408 7.2e-18 96.3 98 58.2
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.2e-17 95.5 59 81.4
AUR62032692 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.0e-16 90.9 163 42.3
AUR62042317 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.7e-11 75.1 227 30.4
AUR62038102 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.1e-10 72.4 137 32.1
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.0e-08 65.9 40 70.0
AUR62027734 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.0e-08 64.3 103 41.7


User provided reference genes

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