Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 0.0e+00 1234.9 641 100.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 0.0e+00 1163.3 642 95.0
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 5.8e-238 827.8 687 65.6
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 5.2e-223 778.1 684 61.7
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.5e-214 750.0 683 60.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.4e-214 748.8 697 59.3
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 5.8e-214 748.0 684 59.2
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.0e-210 737.3 596 65.9
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.8e-210 736.5 677 59.8
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.9e-209 733.0 688 59.0
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.5e-209 732.6 685 59.1
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 7.4e-209 731.1 685 58.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 8.1e-208 727.6 678 59.4
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.1e-207 727.2 727 55.4
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 4.0e-207 725.3 680 59.9
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 4.9e-205 718.4 680 58.7
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-204 717.2 684 58.3
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 5.5e-204 714.9 677 59.7
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 9.3e-204 714.1 679 57.9
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.7e-203 712.6 680 58.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.6e-203 711.8 680 58.1
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.0e-202 709.1 688 57.8
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 3.0e-202 709.1 687 58.7
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.9e-202 708.8 687 56.8
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 5.1e-202 708.4 677 57.3
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.5e-201 706.1 688 57.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 8.2e-200 701.0 683 56.8
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.4e-199 699.5 682 57.2
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 4.0e-199 698.7 672 55.8
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.3e-199 698.4 695 56.3
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 4.5e-198 695.3 675 56.1
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 5.8e-198 694.9 689 56.6
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.3e-197 693.7 684 55.7
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.7e-197 693.3 688 55.7
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.9e-197 692.6 688 56.7
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.9e-196 689.9 684 55.1
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 3.2e-196 689.1 714 55.9
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 4.2e-196 688.7 661 57.9
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 9.3e-196 687.6 675 55.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.6e-195 686.8 685 55.8
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.3e-194 683.7 691 55.4
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.8e-194 683.3 691 54.1
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 2.3e-194 682.9 682 54.1
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.0e-194 682.6 695 53.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 3.9e-194 682.2 684 55.6
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 5.1e-194 681.8 665 56.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.5e-193 680.2 681 55.4
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.5e-193 680.2 686 54.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.5e-193 679.5 707 55.3
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 3.3e-193 679.1 681 53.9
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 4.3e-193 678.7 683 54.3
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.3e-192 677.2 681 55.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.2e-192 676.4 673 55.3
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 3.7e-192 675.6 695 53.5
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 4.8e-192 675.2 681 55.2
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.4e-191 672.9 700 54.4
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 4.1e-191 672.2 675 55.6
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 5.3e-191 671.8 680 53.5
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.5e-190 670.2 698 52.7
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 5.9e-190 668.3 673 55.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 7.6e-190 667.9 695 55.5
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.0e-189 667.5 689 54.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 6.5e-189 664.8 660 54.7
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 2.5e-188 662.9 684 54.7
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 2.5e-188 662.9 723 53.0
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 5.5e-188 661.8 484 68.6
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.2e-187 660.6 602 58.5
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.1e-187 659.8 715 53.0
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.5e-185 653.7 684 54.4
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 5.7e-185 651.7 689 53.6
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 4.1e-183 645.6 696 52.0
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 9.1e-183 644.4 669 52.8
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.0e-182 643.3 674 54.2
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.0e-181 641.0 668 53.6
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 7.2e-180 634.8 601 57.4
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 6.1e-179 631.7 631 56.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.0e-178 629.4 665 53.5
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 8.8e-178 627.9 691 50.8
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 7.7e-174 614.8 638 55.3
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 2.2e-173 613.2 682 52.8
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.9e-172 610.1 665 51.7
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 3.2e-172 609.4 500 63.6
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.1e-167 594.3 674 51.2
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 9.1e-167 591.3 683 52.0
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 3.5e-166 589.3 679 50.7
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 8.5e-165 584.7 643 53.7
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.8e-162 577.0 598 55.0
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.3e-160 570.9 659 49.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 2.7e-158 563.1 707 47.7
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 5.9e-158 562.0 556 53.4
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 6.1e-155 552.0 599 50.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.2e-150 537.7 586 53.9
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 5.0e-141 505.8 632 47.9
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.8e-139 500.0 607 49.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.4e-127 461.1 573 48.7
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 3.5e-126 456.4 516 48.4
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 2.6e-121 440.3 617 44.6
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.8e-115 420.2 298 68.5
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 9.6e-108 395.2 354 55.6
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.6e-107 394.4 637 40.5
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.2e-104 384.0 280 65.4
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.6e-65 254.2 218 62.8
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.8e-37 161.8 312 41.7
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.0e-32 146.0 419 32.9
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.6e-32 142.9 98 70.4
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-30 139.0 98 69.4
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-28 131.0 98 65.3
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.7e-28 130.2 94 67.0
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.0e-22 109.8 129 48.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 4.4e-20 104.0 78 64.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 5.0e-16 90.5 405 25.7
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.0e-13 80.9 62 67.7
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.2e-12 79.3 47 72.3
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.2e-10 71.2 65 58.5
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 3.3e-07 61.2 179 29.1


User provided reference genes

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