Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 7.3e-40 166.8 85 100.0
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 9.0e-38 159.8 85 97.6
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 3.4e-21 104.8 86 64.0
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 4.5e-21 104.4 86 66.3
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.3e-20 102.8 86 61.6
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 8.4e-20 100.1 86 62.8
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 8.4e-20 100.1 86 61.6
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 4.2e-19 97.8 86 61.6
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 4.2e-19 97.8 80 63.8
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 5.5e-19 97.4 86 64.0
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 5.5e-19 97.4 86 61.6
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 7.1e-19 97.1 86 60.5
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 7.1e-19 97.1 86 61.6
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 7.1e-19 97.1 86 62.8
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 1.2e-18 96.3 86 62.8
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 1.6e-18 95.9 86 58.1
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.7e-18 95.1 86 60.5
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 3.5e-18 94.7 86 61.6
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 3.5e-18 94.7 85 61.2
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 4.6e-18 94.4 86 59.3
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 57.0
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 57.0
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 61.6
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 58.1
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 59.3
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 7.9e-18 93.6 86 58.1
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 7.9e-18 93.6 86 60.5
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 1.0e-17 93.2 87 58.6
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 1.3e-17 92.8 87 58.6
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 1.3e-17 92.8 86 60.5
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.8e-17 92.4 84 59.5
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 1.8e-17 92.4 91 58.2
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 1.8e-17 92.4 86 60.5
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 1.8e-17 92.4 86 59.3
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 1.8e-17 92.4 86 65.1
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 3.9e-17 91.3 86 59.3
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 5.1e-17 90.9 86 58.1
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 6.7e-17 90.5 86 58.1
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.1e-16 89.7 85 54.1
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.1e-16 89.7 86 59.3
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 1.1e-16 89.7 87 54.0
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 1.1e-16 89.7 86 53.5
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.5e-16 89.4 87 56.3
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.5e-16 89.4 87 56.3
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.5e-16 89.4 87 56.3
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.5e-16 89.4 87 56.3
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.5e-16 89.4 87 56.3
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 1.5e-16 89.4 86 55.8
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 1.5e-16 89.4 80 60.0
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 1.5e-16 89.4 86 57.0
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 1.9e-16 89.0 86 59.3
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.9e-16 89.0 86 59.3
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 1.9e-16 89.0 86 53.5
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 2.5e-16 88.6 86 57.0
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 2.5e-16 88.6 86 57.0
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 3.3e-16 88.2 87 56.3
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 3.3e-16 88.2 86 55.8
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 3.3e-16 88.2 86 57.0
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 5.7e-16 87.4 82 59.8
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 5.7e-16 87.4 87 56.3
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 5.7e-16 87.4 84 56.0
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 5.7e-16 87.4 86 60.5
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 9.7e-16 86.7 86 57.0
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 1.6e-15 85.9 85 56.5
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 1.6e-15 85.9 83 55.4
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 1.6e-15 85.9 86 58.1
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 6.3e-15 84.0 86 53.5
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 1.1e-14 83.2 84 54.8
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 1.8e-14 82.4 86 53.5
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 1.8e-14 82.4 86 53.5
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 2.4e-14 82.0 86 54.7
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 3.1e-14 81.6 85 52.9
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 9.0e-14 80.1 86 53.5
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 9.0e-14 80.1 83 53.0
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 1.5e-13 79.3 81 53.1
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 1.5e-13 79.3 88 50.0
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 1.5e-13 79.3 83 54.2
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 2.0e-13 79.0 86 52.3
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 2.0e-13 79.0 80 51.2
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 2.6e-13 78.6 79 55.7
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.6e-13 78.6 86 53.5
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 3.4e-13 78.2 86 53.5
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 5.9e-13 77.4 86 48.8
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 7.7e-13 77.0 86 48.8
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 1.0e-12 76.6 85 50.6
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 1.3e-12 76.3 87 49.4
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 1.3e-12 76.3 86 48.8
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 1.3e-12 76.3 87 52.9
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 1.7e-12 75.9 86 48.8
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 1.7e-12 75.9 83 51.8
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 5.0e-12 74.3 86 52.3
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.1e-11 73.2 74 50.0
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 1.9e-11 72.4 86 52.3
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 3.2e-11 71.6 89 46.1
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 5.5e-11 70.9 86 47.7
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 7.2e-11 70.5 174 33.9
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 1.2e-10 69.7 85 48.2
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 1.6e-10 69.3 85 48.2
Sc06g0010190 Simmondsia chinensis HOM05D006634 ORTHO05D008282 2.1e-10 68.9 42 85.7
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 3.6e-10 68.2 75 52.0
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 6.1e-10 67.4 82 46.3
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 1.4e-09 66.2 82 46.3
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 2.3e-09 65.5 65 52.3
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 1.9e-08 62.4 86 45.3
Ah.01g002900 Amaranthus hybridus HOM05D006634 ORTHO05D008282 2.2e-07 58.9 47 63.8
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 2.2e-07 58.9 53 56.6
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 6.3e-07 57.4 97 40.2
Pp3c7_7440 Physcomitrium patens HOM05D006634 ORTHO05D008282 6.3e-07 57.4 91 37.4
SHI06100 Sapria himalayana HOM05D006634 ORTHO05D008282 4.1e-06 54.7 66 51.5
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 5.3e-06 54.3 48 56.2
Actinidia20457 Actinidia chinensis HOM05D006634 ORTHO05D008282 6.9e-06 53.9 50 58.0
Lj1A192T37 Lonicera japonica HOM05D006634 ORTHO05D008282 6.9e-06 53.9 42 66.7


User provided reference genes

Program Settings