Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.3e-69 264.2 133 100.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.0e-61 236.9 134 92.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 7.0e-45 184.1 131 70.2
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.2e-36 156.8 134 58.2
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 5.7e-31 137.9 130 53.1
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 7.2e-26 120.9 136 49.3
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 7.5e-23 110.9 130 47.7
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.3e-22 110.2 129 45.7
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.7e-22 109.8 137 45.3
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.8e-22 109.0 127 44.9
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.8e-22 109.0 134 44.8
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.7e-22 108.6 137 43.1
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 4.8e-22 108.2 138 42.8
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 6.3e-22 107.8 132 44.7
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.1e-21 105.5 122 47.5
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.2e-20 103.6 124 47.6
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.2e-20 103.6 138 44.2
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-20 103.6 138 44.2
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.2e-20 103.6 134 46.3
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.6e-20 103.2 130 43.1
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.0e-20 102.8 132 47.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.0e-20 102.8 127 45.7
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.0e-20 102.8 127 46.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-20 102.4 138 43.5
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 5.9e-20 101.3 135 45.2
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 7.7e-20 100.9 123 48.0
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.0e-19 100.5 132 42.4
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.0e-19 100.5 129 42.6
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.0e-19 100.5 124 47.6
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.0e-19 100.5 125 44.0
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.3e-19 100.1 138 42.8
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.3e-19 100.1 121 45.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.3e-19 99.4 131 42.7
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.8e-19 98.6 138 42.8
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.0e-19 98.2 131 42.7
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 5.0e-19 98.2 129 41.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 8.6e-19 97.4 121 43.8
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 8.6e-19 97.4 138 38.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-18 96.7 125 39.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.5e-18 95.9 136 40.4
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.5e-18 95.9 137 41.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.3e-18 95.5 125 44.0
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.2e-18 95.1 135 44.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 4.2e-18 95.1 121 42.1
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 4.2e-18 95.1 126 42.9
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.5e-18 94.7 126 41.3
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.5e-18 94.7 133 39.8
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 5.5e-18 94.7 133 40.6
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.2e-18 94.4 125 42.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 9.5e-18 94.0 139 41.0
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 9.5e-18 94.0 131 42.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-17 93.6 125 38.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.6e-17 93.2 125 38.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.6e-17 93.2 132 39.4
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.1e-17 92.8 139 44.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 4.7e-17 91.7 135 40.0
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.1e-17 91.3 127 43.3
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.1e-17 91.3 142 35.9
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 8.0e-17 90.9 143 39.9
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 8.0e-17 90.9 124 41.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.4e-16 90.1 120 41.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.4e-16 90.1 121 41.3
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.4e-16 90.1 138 38.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.8e-16 89.7 128 40.6
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.8e-16 89.7 126 42.1
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 2.3e-16 89.4 140 38.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.0e-16 89.0 126 39.7
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.0e-16 89.0 145 33.8
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 4.0e-16 88.6 118 42.4
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 4.0e-16 88.6 132 42.4
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.6e-15 85.9 129 39.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.6e-15 85.9 145 33.1
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 7.5e-15 84.3 128 39.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 9.8e-15 84.0 123 41.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.8e-15 84.0 125 39.2
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.3e-14 83.6 120 40.8
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.7e-14 83.2 139 36.0
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.2e-14 82.8 142 37.3
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-14 82.0 125 38.4
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.7e-14 82.0 137 38.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.3e-14 81.3 125 37.6
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 8.3e-14 80.9 116 38.8
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.1e-13 80.5 146 37.0
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.4e-13 80.1 130 34.6
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.4e-13 79.3 103 48.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.4e-13 79.3 139 38.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 4.1e-13 78.6 128 37.5
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 9.2e-13 77.4 137 36.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-12 77.0 104 42.3
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.6e-12 76.6 116 39.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.6e-12 76.6 133 35.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.6e-12 76.6 104 40.4
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.7e-12 75.9 137 35.8
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 4.5e-12 75.1 115 39.1
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 4.5e-12 75.1 126 40.5
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 7.8e-12 74.3 102 42.2
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 7.8e-12 74.3 115 37.4
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 7.8e-12 74.3 102 42.2
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 7.8e-12 74.3 115 37.4
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.0e-11 73.9 115 36.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.0e-11 73.9 89 48.3
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.0e-11 73.9 122 38.5
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.3e-11 73.6 102 43.1
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-11 73.6 115 38.3
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-11 73.6 102 43.1
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-11 73.6 103 43.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.7e-11 73.2 102 42.2
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 2.3e-11 72.8 104 43.3
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 5.0e-11 71.6 115 37.4
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.0e-11 71.6 110 40.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.1e-10 70.5 109 40.4
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-10 70.1 110 43.6
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.9e-10 69.7 115 35.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.3e-10 68.9 105 42.9
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 5.6e-10 68.2 121 37.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 5.6e-10 68.2 126 31.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.6e-09 66.6 109 40.4
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.6e-09 66.6 141 34.8
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 4.0e-08 62.0 132 30.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.9e-08 60.8 137 33.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.5e-07 60.1 103 35.0
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.6e-07 59.3 132 28.8
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 7.5e-07 57.8 130 33.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 7.5e-07 57.8 130 33.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 9.8e-07 57.4 125 31.2
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 2.9e-06 55.8 116 31.9
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 2.9e-06 55.8 104 42.3
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.7e-06 55.5 132 34.1
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.9e-06 55.1 131 32.1


User provided reference genes

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