Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.0e-260 902.9 453 100.0
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 6.7e-249 863.6 453 95.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.5e-208 729.6 501 76.6
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.5e-171 605.9 446 69.1
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.8e-164 583.2 448 66.1
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 8.7e-164 580.9 462 65.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.5e-163 580.1 452 64.6
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 3.3e-163 578.9 450 65.8
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 4.3e-163 578.6 441 65.8
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 2.8e-162 575.9 451 65.2
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 2.8e-162 575.9 445 66.3
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.7e-162 575.5 439 67.0
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 4.8e-162 575.1 443 66.4
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.1e-161 573.9 448 66.1
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.8e-161 573.2 450 66.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.4e-161 572.8 448 65.8
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 9.0e-161 570.9 450 65.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.6e-160 569.3 449 65.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.3e-159 567.0 417 68.8
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.2e-159 566.2 450 63.6
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 2.9e-159 565.8 454 65.4
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 4.9e-159 565.1 453 66.2
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.9e-159 565.1 453 66.2
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 4.9e-159 565.1 445 64.7
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-158 563.5 453 66.0
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.4e-158 562.8 451 63.9
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.4e-158 562.8 437 65.4
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.2e-157 560.5 453 65.8
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 4.6e-157 558.5 451 64.1
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 7.9e-157 557.8 443 64.3
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 7.9e-157 557.8 445 64.3
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 7.9e-157 557.8 451 64.5
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.0e-156 557.4 453 64.0
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.3e-156 556.2 447 65.1
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.0e-156 555.8 443 64.3
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.9e-156 555.4 436 66.5
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.8e-154 549.3 448 64.1
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 4.8e-154 548.5 446 63.7
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 6.2e-154 548.1 452 63.9
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 6.2e-154 548.1 448 64.1
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 6.2e-154 548.1 436 64.2
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.8e-153 546.6 539 54.9
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.1e-153 545.8 447 64.4
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 5.3e-153 545.0 442 62.2
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 5.3e-153 545.0 436 64.0
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.5e-152 543.5 443 64.6
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.7e-151 540.0 444 64.4
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-150 537.3 452 61.9
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 2.7e-149 532.7 438 63.2
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.6e-149 531.9 443 61.6
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 6.0e-149 531.6 446 61.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 7.9e-149 531.2 451 61.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.5e-147 526.2 436 61.0
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 5.7e-147 525.0 451 60.8
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.3e-146 523.9 438 63.2
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-146 523.9 451 60.3
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.8e-146 522.7 440 62.7
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.8e-146 522.7 444 59.7
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.8e-146 522.7 431 61.7
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.4e-145 519.6 440 60.2
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.1e-145 519.2 442 60.4
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.3e-143 513.8 443 58.7
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-143 513.8 445 60.2
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.2e-143 513.1 447 58.4
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.4e-142 510.4 452 58.0
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.2e-142 509.2 457 60.8
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 3.2e-142 509.2 434 58.8
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 9.4e-142 507.7 455 58.0
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 9.4e-142 507.7 443 62.1
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.2e-141 507.3 442 59.0
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.6e-141 506.9 439 58.5
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-141 505.8 433 59.8
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 4.6e-141 505.4 434 58.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 7.9e-141 504.6 448 58.3
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.4e-140 503.8 455 57.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.8e-140 503.4 449 57.7
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 5.1e-140 501.9 440 61.8
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 6.7e-140 501.5 448 57.6
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-139 500.7 417 60.2
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.5e-139 499.6 450 56.4
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.2e-138 496.5 455 57.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.2e-138 496.5 451 57.2
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.2e-138 496.5 455 57.4
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 2.8e-138 496.1 451 56.3
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 4.8e-138 495.4 447 57.5
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 4.8e-138 495.4 442 57.5
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 6.3e-138 495.0 448 57.6
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.8e-137 493.4 448 56.7
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.1e-137 492.7 447 57.0
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 3.8e-135 485.7 458 56.6
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 8.5e-135 484.6 442 57.0
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-134 483.4 447 56.6
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.9e-134 483.4 431 59.4
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.2e-134 482.3 451 56.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.2e-133 480.7 447 57.5
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.6e-133 480.3 429 57.8
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.6e-133 479.2 431 59.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.8e-132 476.9 435 57.5
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 6.7e-132 474.9 440 56.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 8.8e-132 474.6 445 57.3
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 8.8e-132 474.6 449 57.7
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.4e-131 472.2 436 54.4
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 7.4e-131 471.5 466 56.0
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.2e-130 468.0 436 54.1
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 2.4e-129 466.5 451 56.3
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.5e-128 463.8 449 55.2
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 2.6e-128 463.0 417 57.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 4.5e-128 462.2 448 55.4
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 2.5e-126 456.4 445 56.4
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 4.1e-121 439.1 439 52.6
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.5e-118 429.9 390 57.4
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.2e-117 427.6 394 57.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.8e-116 423.7 447 53.7
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.1e-113 414.5 364 60.7
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 5.3e-113 412.1 415 56.6
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.6e-112 410.6 322 62.7
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-110 404.4 350 60.3
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.2e-109 401.0 310 70.0
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.8e-106 389.8 436 52.3
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 2.4e-105 386.7 445 48.8
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.8e-100 370.5 337 58.5
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 3.4e-99 366.3 464 44.2
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.4e-99 366.3 338 56.2
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-99 365.9 296 61.1
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.8e-97 360.5 426 46.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-93 347.4 291 59.8
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 6.8e-92 342.0 446 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.9e-89 334.0 486 40.1
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 3.7e-82 309.7 196 74.0
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.5e-80 303.1 291 53.6
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 6.2e-77 292.4 223 62.8
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 7.3e-70 268.9 186 71.5
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.1e-68 263.5 311 44.7
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.6e-67 260.4 489 35.6
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 1.7e-63 247.7 243 58.8
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 6.9e-60 235.7 261 51.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 6.9e-52 209.1 186 58.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 4.6e-48 196.4 130 75.4
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.1e-36 158.7 293 35.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.0e-36 156.8 292 33.9
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-35 155.2 122 63.9
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.3e-31 141.7 85 77.6
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.0e-26 125.6 207 34.8
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 7.2e-25 119.4 83 65.1
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 5.7e-22 109.8 80 65.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.2e-17 94.0 81 55.6
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.7e-16 90.9 134 45.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 3.6e-16 90.5 64 64.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 7.9e-16 89.4 68 58.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.8e-15 88.2 64 62.5
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 3.1e-12 77.4 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 8.5e-10 69.3 46 65.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 9.4e-09 65.9 403 24.1
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-06 58.5 69 44.9


User provided reference genes

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