Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.3e-298 1026.9 528 100.0
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 8.0e-286 986.5 544 93.6
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 4.3e-247 857.8 528 82.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.5e-241 838.2 583 75.8
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 2.6e-228 795.4 521 76.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.0e-212 742.7 532 71.1
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.7e-211 739.6 534 71.9
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 3.6e-209 731.9 536 68.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 7.9e-209 730.7 536 69.4
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.8e-208 729.6 522 70.3
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.9e-207 726.1 536 69.4
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.5e-207 725.7 533 68.1
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 4.3e-207 724.9 520 71.5
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 5.7e-207 724.5 530 69.6
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.7e-206 723.0 532 69.4
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.7e-206 723.0 535 67.5
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 6.3e-206 721.1 535 67.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.1e-205 718.8 536 68.7
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 9.1e-205 717.2 535 68.4
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 2.0e-204 716.1 535 68.4
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.6e-204 715.7 535 68.4
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 5.9e-204 714.5 536 67.7
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.3e-203 713.4 530 67.7
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.2e-203 712.6 531 68.0
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 6.5e-203 711.1 536 67.4
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.2e-202 708.4 534 67.6
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 4.2e-202 708.4 534 67.8
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.2e-201 706.8 534 67.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 2.1e-201 706.1 534 67.6
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.4e-200 703.4 554 65.3
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 5.1e-200 701.4 531 67.4
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.3e-199 698.7 525 65.7
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 9.7e-199 697.2 536 66.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.7e-199 697.2 524 67.6
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.2e-198 696.0 531 67.0
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.2e-198 696.0 525 66.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 4.8e-198 694.9 548 64.6
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.2e-196 690.3 532 66.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.5e-196 689.9 542 65.1
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.3e-195 686.8 534 66.3
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 3.8e-195 685.3 529 66.7
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 8.5e-195 684.1 531 65.3
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.4e-192 676.8 524 66.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.0e-192 675.6 528 66.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 8.8e-192 674.1 524 66.0
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 7.4e-191 671.0 527 64.9
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.7e-190 669.8 520 65.2
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.1e-189 667.2 529 62.9
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.4e-189 666.8 528 63.4
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 7.0e-189 664.5 573 61.8
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 7.0e-189 664.5 529 62.9
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.6e-188 662.5 527 63.9
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.6e-188 662.5 520 65.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 7.7e-188 661.0 534 64.4
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 2.2e-187 659.4 526 64.3
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.9e-187 659.1 527 63.4
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 2.9e-187 659.1 530 62.6
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 6.5e-187 657.9 525 63.6
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 8.5e-187 657.5 526 63.9
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 2.5e-186 656.0 527 63.9
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 4.2e-186 655.2 527 63.9
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.6e-185 653.3 521 64.1
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.0e-184 649.0 527 62.8
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.7e-184 647.9 531 62.7
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.5e-183 646.7 526 63.7
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.2e-182 642.9 527 61.1
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.9e-178 629.8 535 62.6
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 4.7e-177 625.2 527 61.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.5e-175 620.2 503 63.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.6e-175 619.4 582 58.4
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 2.6e-175 619.4 524 59.7
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 9.8e-175 617.5 561 57.9
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.8e-174 615.9 451 68.1
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 4.8e-174 615.1 496 64.7
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-173 614.0 543 60.2
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.8e-169 599.4 446 67.3
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.7e-166 590.1 528 58.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.7e-166 589.0 532 55.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.0e-163 580.9 529 58.8
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 6.6e-163 578.2 532 54.9
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.5e-162 577.0 529 58.4
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 7.3e-162 574.7 437 67.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.0e-160 570.9 528 57.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.8e-160 570.1 546 56.6
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.1e-160 569.3 530 57.5
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.2e-159 567.4 526 56.1
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.3e-150 537.3 530 55.1
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.2e-149 532.7 525 53.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.4e-144 517.3 413 64.2
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.3e-142 510.8 525 52.4
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.3e-142 510.8 401 63.6
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.0e-140 501.9 390 64.9
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.1e-137 493.4 568 51.8
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.3e-134 484.2 541 49.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 6.6e-131 471.9 519 47.6
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.4e-125 453.4 541 46.0
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.1e-113 413.7 501 46.3
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 4.2e-109 399.4 344 58.1
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.6e-108 397.5 344 57.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 2.4e-104 383.6 286 68.9
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.0e-104 382.9 550 40.0
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.2e-95 354.8 287 62.4
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 5.9e-95 352.4 461 42.1
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.5e-90 337.8 548 38.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.7e-82 308.5 306 54.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.5e-77 292.7 204 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.2e-76 291.6 392 43.9
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.5e-70 269.2 577 34.5
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 2.6e-66 257.3 555 32.4
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.2e-61 239.2 166 72.3
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.0e-59 235.3 212 57.5
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.0e-51 208.8 531 30.3
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.4e-51 208.4 150 65.3
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.8e-48 198.0 168 57.7
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 5.4e-48 196.4 135 74.1
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.8e-47 192.6 132 74.2
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.5e-37 161.0 135 62.2
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 2.3e-35 154.5 123 56.1
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 4.4e-34 150.2 85 90.6
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.2e-31 142.1 113 65.5
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.5e-29 135.2 99 71.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.4e-24 118.6 119 52.9
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.6e-23 115.2 430 27.4
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.4e-19 101.3 149 41.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.6e-15 88.6 88 54.5
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.3e-14 84.7 71 60.6
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.1e-13 82.4 87 51.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.1e-13 82.4 87 51.7
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 9.6e-13 79.3 73 56.2
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.5e-10 72.0 112 38.4
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.6e-10 71.2 125 36.0
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 1.3e-09 68.9 49 61.2
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-08 65.5 113 35.4
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 7.1e-08 63.2 269 28.3
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.5e-07 60.8 254 27.6
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 7.9e-07 59.7 66 47.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 1.7e-06 58.5 76 44.7
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 6.6e-06 56.6 87 46.0
Eucgr.C04416 Eucalyptus grandis HOM05D000311 ORTHO05D000183 6.6e-06 56.6 238 26.1


User provided reference genes

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