Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 4829.6 2498 100.0
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 4634.7 2496 96.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 4045.0 2524 84.2
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3356.6 2513 70.6
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3206.8 2543 67.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3181.7 2542 67.0
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3124.7 2555 65.0
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3124.3 2544 65.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3124.3 2551 65.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3115.5 2579 64.8
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3113.6 2522 65.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3108.2 2545 65.2
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3107.8 2550 65.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3100.8 2558 64.8
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3089.7 2549 64.9
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3089.3 2546 64.6
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3087.7 2520 65.5
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3079.3 2570 64.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3074.3 2551 64.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3070.4 2543 64.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3058.5 2560 63.8
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3051.9 2553 64.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3038.8 2521 64.6
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3038.1 2548 64.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3037.3 2556 63.4
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3037.3 2526 64.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3036.5 2585 63.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3023.0 2523 64.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3016.9 2518 64.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3016.1 2559 62.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3006.1 2542 63.5
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 2995.7 2542 62.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 2991.8 2516 63.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 2987.6 2521 63.4
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 2972.6 2527 63.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 2970.3 2515 63.0
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 2944.5 2608 61.5
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2940.6 2559 62.3
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2937.1 2560 62.3
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2926.0 2532 62.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 2922.9 2532 62.7
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 2920.2 2845 58.1
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 2919.0 2558 61.5
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 2917.5 2525 62.6
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 2913.3 2555 61.8
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 2909.8 2529 61.8
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 2905.9 2543 61.4
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 2890.9 2546 61.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2871.3 2243 67.5
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2864.3 2550 60.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2834.7 2593 60.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2828.5 2367 64.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2818.1 2569 59.7
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2811.6 2522 60.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2799.2 2522 59.8
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2795.4 2530 59.9
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2786.9 2526 59.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2764.2 2538 58.8
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2742.6 2558 58.2
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2725.3 2514 58.6
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2716.0 2514 58.4
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2703.3 2546 57.8
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2697.2 2546 57.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2680.2 2410 60.7
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2619.3 2557 56.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2614.3 2234 62.5
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2593.1 2090 66.1
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2563.9 2599 56.6
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2501.9 1880 69.8
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2456.4 2042 64.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2420.6 1892 67.8
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2338.1 1735 70.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2249.6 1646 71.0
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2162.5 2290 53.4
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 2053.9 1399 78.1
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 1981.5 1726 62.9
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1975.7 1836 59.4
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 1966.0 1780 61.0
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1945.2 2691 44.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1896.7 1695 60.6
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1861.3 2333 47.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1836.6 1738 57.8
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1571.6 1149 71.5
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1558.5 1103 73.8
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1558.1 2540 39.9
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1474.1 1182 67.7
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1464.5 1185 65.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1437.6 1147 67.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1429.5 1157 67.0
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1384.8 2537 38.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1368.2 2656 35.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1313.9 1194 59.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1298.5 858 76.9
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1263.8 1604 47.0
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1256.9 886 75.3
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1245.7 1175 58.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1244.2 1483 49.9
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1192.2 905 67.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1149.8 748 77.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1096.3 1468 46.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.4e-270 936.8 676 71.9
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.5e-268 930.6 614 79.0
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 7.5e-241 839.3 1107 45.8
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.1e-239 833.6 1013 49.7
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.5e-225 788.5 1054 46.8
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.9e-189 667.5 614 64.0
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.8e-185 653.7 912 43.2
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.3e-184 652.5 650 56.5
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.7e-182 644.8 847 48.6
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.1e-167 596.3 653 52.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 7.4e-164 583.6 647 50.9
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.8e-163 580.9 384 75.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.4e-157 562.8 836 42.7
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.1e-148 533.1 739 44.9
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 5.0e-144 517.7 492 56.7
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 5.2e-141 507.7 680 45.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 4.4e-132 478.0 498 54.6
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 8.5e-128 463.8 492 52.0
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 4.2e-127 461.5 492 53.3
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.7e-120 439.5 487 50.1
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.5e-108 397.5 397 55.7
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 7.0e-106 391.0 264 72.3
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.1e-102 379.4 485 43.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.2e-102 377.9 239 84.5
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 8.3e-91 340.9 180 90.6
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.6e-86 325.5 180 85.6
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.4e-85 323.6 347 49.0
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-82 313.5 208 78.8
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 5.3e-77 295.0 219 69.4
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 4.4e-76 292.0 204 73.0
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 9.0e-69 267.7 151 87.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.4e-67 261.5 158 76.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.4e-63 248.1 220 60.0
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 5.3e-61 241.9 231 57.6
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 2.5e-50 206.5 321 44.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.2e-50 205.7 116 96.6
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.5e-47 196.4 211 51.7
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 7.4e-47 194.9 285 43.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 4.8e-46 192.2 287 44.6
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 4.5e-44 185.7 308 41.2
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 5.5e-42 178.7 255 40.8
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 7.4e-39 168.3 105 81.0
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 9.7e-39 167.9 1947 22.9
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.8e-37 163.7 288 43.8
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.6e-33 150.6 116 66.4
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.0e-27 129.0 143 49.0
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 8.5e-27 128.3 142 47.2
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 4.2e-26 125.9 101 69.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 4.2e-26 125.9 101 69.3
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 4.4e-23 115.9 75 81.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 3.7e-22 112.8 111 54.1
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.8e-19 102.8 117 48.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.0e-17 95.1 131 48.1
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.2e-15 91.3 102 50.0
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 7.5e-15 88.6 88 52.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.7e-14 87.4 122 45.9
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.1e-13 84.7 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.1e-13 84.7 67 67.2
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.1e-13 82.8 150 42.0
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 4.1e-13 82.8 57 75.4
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 7.7e-12 78.6 182 34.1
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 7.7e-12 78.6 205 32.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 2.2e-11 77.0 45 82.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.9e-10 73.9 122 35.2
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.2e-10 73.2 73 56.2
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.2e-10 72.0 79 60.8
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 9.4e-10 71.6 91 51.6
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 9.4e-10 71.6 48 81.2
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 6.1e-09 68.9 58 60.3
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.3e-08 67.0 58 56.9
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 6.8e-08 65.5 78 47.4
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.4e-07 62.8 62 53.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.2e-06 60.5 34 76.5
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 8.3e-06 58.5 138 34.1


User provided reference genes

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