Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.8e-112 408.7 216 100.0
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.9e-110 401.0 216 97.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.9e-92 342.8 216 85.2
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.0e-82 310.5 210 75.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.9e-68 263.1 206 65.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.7e-64 250.0 198 63.6
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.9e-64 248.4 198 63.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 6.0e-62 241.5 198 61.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.0e-61 239.2 200 61.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.5e-60 236.1 194 64.4
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 3.3e-60 235.7 192 63.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 9.5e-60 234.2 196 60.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.1e-59 233.0 192 62.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.8e-59 232.6 197 61.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 4.7e-59 231.9 204 61.3
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.7e-59 231.9 202 59.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.2e-59 231.5 205 59.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.2e-59 231.5 205 59.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 6.2e-59 231.5 192 61.5
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.4e-58 230.3 192 62.0
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.8e-58 229.9 208 58.7
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.8e-58 229.9 203 59.6
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.3e-58 229.6 192 62.5
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 3.1e-58 229.2 208 57.7
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.8e-58 228.0 197 59.9
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 8.9e-58 227.6 192 60.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.2e-57 227.3 192 63.0
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.4e-57 225.3 203 59.1
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.4e-57 225.3 196 60.2
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.7e-56 222.2 205 58.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.9e-56 221.9 195 57.4
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 4.9e-56 221.9 196 59.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.9e-56 221.9 204 57.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 4.9e-56 221.9 200 58.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.4e-56 221.5 208 57.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 8.3e-56 221.1 207 56.0
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.9e-55 219.9 209 57.4
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.9e-55 219.9 192 58.3
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.4e-55 219.5 185 62.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.4e-55 219.5 194 60.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.2e-55 219.2 208 56.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.1e-55 218.8 209 54.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.1e-55 218.0 193 59.1
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.2e-55 217.6 194 58.2
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-54 216.9 193 59.1
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.1e-54 216.5 198 56.6
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.1e-54 216.5 207 56.0
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 2.1e-54 216.5 206 55.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.7e-54 216.1 191 59.7
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.6e-54 215.3 200 57.0
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.7e-53 213.4 194 57.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 3.9e-53 212.2 192 57.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.9e-53 212.2 221 56.6
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.9e-53 212.2 210 56.2
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 6.6e-53 211.5 207 55.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.1e-52 210.7 193 56.0
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.5e-52 209.5 198 55.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 4.3e-52 208.8 203 56.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.1e-51 206.5 203 57.1
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.7e-51 205.3 207 55.1
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.1e-51 204.5 192 57.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-50 204.1 193 56.0
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.1e-50 204.1 215 52.1
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.8e-50 203.4 216 56.5
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.3e-50 203.0 193 55.4
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 8.9e-50 201.1 194 57.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 8.9e-50 201.1 210 53.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 8.9e-50 201.1 196 57.7
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.5e-49 200.3 203 51.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-49 198.7 200 57.0
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.8e-49 198.4 214 53.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 7.6e-49 198.0 208 53.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 7.6e-49 198.0 192 56.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 9.9e-49 197.6 190 57.4
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.7e-48 196.8 190 53.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.8e-48 195.7 196 52.6
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 3.8e-48 195.7 190 53.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.9e-48 195.3 168 63.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 6.4e-48 194.9 208 52.4
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 8.4e-48 194.5 212 50.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-47 194.1 201 50.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.1e-47 194.1 201 50.2
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.1e-47 194.1 196 50.5
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.9e-47 193.4 192 54.2
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.4e-47 193.0 205 53.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.1e-47 192.2 194 51.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.1e-47 192.2 190 52.1
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 9.2e-47 191.0 182 57.7
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.6e-46 190.3 195 51.8
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.5e-46 189.1 208 51.4
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 4.6e-46 188.7 196 51.5
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.9e-45 185.7 190 49.5
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 7.3e-44 181.4 217 46.1
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.2e-43 180.6 190 50.0
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-43 180.3 144 61.1
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-43 180.3 177 54.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-43 179.9 205 46.3
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-43 179.9 205 46.3
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.6e-43 179.1 217 45.6
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.7e-43 178.7 205 46.3
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 5.2e-42 175.3 205 45.4
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 5.2e-42 175.3 194 46.4
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 5.2e-42 175.3 209 48.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.0e-41 173.3 196 44.9
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.0e-41 173.3 201 46.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.4e-41 172.2 190 47.4
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.7e-40 170.2 197 52.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.9e-40 169.5 204 44.1
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.4e-40 168.3 210 46.7
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.4e-39 166.4 198 42.9
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 9.3e-39 164.5 130 63.8
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 6.0e-38 161.8 148 56.1
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 9.0e-34 147.9 209 45.9
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-30 136.7 207 40.1
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-30 136.7 207 40.1
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.1e-30 136.7 196 43.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.7e-30 136.3 207 39.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 4.6e-30 135.6 207 39.6
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.6e-30 135.6 198 43.4
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 3.3e-28 129.4 121 60.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.4e-28 128.3 119 58.0
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.6e-27 127.1 197 42.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.4e-23 114.0 209 36.8
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.2e-23 112.5 82 65.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.6e-22 110.5 200 37.0
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.1e-22 110.2 200 38.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.8e-21 107.1 189 33.9
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 6.7e-21 105.1 187 39.0
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.9e-20 103.6 182 35.7
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 5.6e-20 102.1 199 37.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.7e-19 99.4 178 35.4
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.0e-17 93.6 184 37.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.3e-16 90.9 189 32.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.2e-14 84.3 186 34.4
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 5.1e-13 79.0 87 47.1
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 4.3e-12 75.9 131 41.2
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 3.4e-09 66.2 96 33.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 7.6e-09 65.1 48 58.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 3.8e-08 62.8 60 60.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 5.0e-08 62.4 60 60.0
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.1e-07 61.2 132 31.1
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-07 60.8 71 53.5
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-07 60.8 71 53.5
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-07 60.5 60 56.7
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 4.2e-07 59.3 189 28.6
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 5.5e-07 58.9 70 41.4
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 4.6e-06 55.8 48 54.2


User provided reference genes

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