Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.0e-99 366.7 181 100.0
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.1e-99 364.4 181 98.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.0e-91 338.6 183 90.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.1e-90 336.7 176 92.6
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 4.1e-88 328.2 181 85.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 85.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 86.7
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 4.5e-87 324.7 181 86.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 7.7e-87 323.9 179 86.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 7.7e-87 323.9 182 85.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.0e-86 323.6 179 85.5
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-86 323.2 179 84.4
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 2.2e-86 322.4 179 84.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.2e-86 322.4 179 85.5
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.2e-86 322.4 179 85.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.8e-86 321.6 179 84.9
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 5.0e-86 321.2 181 83.4
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.0e-86 321.2 181 83.4
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 5.0e-86 321.2 179 84.9
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-85 320.1 179 84.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.1e-85 320.1 181 82.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 83.4
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.9e-85 319.3 181 84.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.5e-85 318.9 179 84.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 4.2e-85 318.2 179 83.8
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 83.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 84.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.2e-85 317.4 179 84.9
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 9.4e-85 317.0 179 84.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 9.4e-85 317.0 179 84.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-84 315.8 179 81.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.7e-84 315.5 179 82.7
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.7e-84 315.5 179 83.2
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 81.8
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 81.8
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 81.8
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.9e-83 311.6 181 82.3
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 3.9e-83 311.6 179 82.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.1e-83 311.2 176 82.4
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 5.1e-83 311.2 179 82.7
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 6.7e-83 310.8 181 82.3
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 83.5
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.5e-82 309.7 179 81.0
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 81.2
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.5e-82 308.9 176 83.0
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.5e-82 308.9 176 83.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 7.4e-82 307.4 168 86.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 81.8
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 9.7e-82 307.0 180 81.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.7e-82 307.0 181 79.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 79.0
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.2e-81 305.8 180 80.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.2e-81 305.8 176 81.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.2e-81 305.8 176 82.4
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.7e-81 305.1 179 81.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.8e-81 304.7 179 80.4
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 178 79.8
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 78.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.4e-80 302.4 179 79.3
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.4e-80 302.4 180 81.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 78.8
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 78.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 5.3e-80 301.2 179 81.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 78.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 79.0
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 77.9
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 9.1e-80 300.4 180 80.6
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 80.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.5e-79 299.7 175 80.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 2.0e-79 299.3 167 85.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.0e-79 299.3 180 80.6
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 78.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 4.5e-79 298.1 177 80.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 79.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 79.6
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 79.0
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 5.9e-79 297.7 201 73.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 79.0
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.0e-78 297.0 180 80.0
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-78 295.8 174 80.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 5.0e-78 294.7 176 79.5
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 5.0e-78 294.7 174 79.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 8.5e-78 293.9 169 82.8
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-77 293.5 170 81.8
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 78.5
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.9e-77 292.7 173 78.6
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.5e-77 292.4 181 77.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.2e-77 292.0 170 81.2
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 4.2e-77 291.6 182 78.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.5e-77 291.2 181 78.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 7.2e-77 290.8 173 77.5
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 9.4e-77 290.4 177 79.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 9.4e-77 290.4 177 79.7
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 9.4e-77 290.4 177 79.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 78.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.6e-76 289.7 200 72.0
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-76 289.7 181 76.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.1e-76 289.3 178 79.2
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.7e-76 288.9 177 79.1
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.7e-76 288.9 169 79.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.7e-76 288.9 168 81.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 3.6e-76 288.5 182 77.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.7e-76 288.1 178 78.1
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.7e-76 288.1 183 76.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.7e-76 288.1 183 76.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.1e-76 287.7 175 77.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.0e-75 287.0 174 79.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.4e-75 286.6 168 81.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.4e-75 286.6 178 78.7
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 8.8e-75 283.9 178 77.5
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.5e-74 283.1 168 80.4
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.6e-74 282.3 181 76.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 9.7e-74 280.4 172 78.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.8e-73 278.9 168 79.2
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.8e-72 276.2 169 79.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.4e-72 275.8 168 78.6
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.2e-71 273.5 180 75.0
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.5e-71 273.1 181 74.6
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.5e-71 271.9 178 74.7
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.5e-71 271.6 161 80.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 7.7e-71 270.8 178 74.2
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.9e-69 266.2 182 71.4
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.7e-68 262.3 179 71.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.8e-67 259.6 258 54.7
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 3.0e-67 258.8 150 82.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.0e-67 258.8 178 69.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.8e-65 251.5 148 81.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.0e-62 241.5 181 69.6
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.5e-61 240.0 178 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 8.0e-60 234.2 177 62.7
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.4e-59 233.4 170 64.1
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.3e-59 232.6 168 65.5
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 8.3e-49 197.6 134 76.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 2.4e-48 196.1 172 54.1
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.8e-46 188.7 172 58.7
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 9.8e-42 174.1 100 84.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.1e-36 156.4 102 75.5
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.5e-34 150.2 116 67.2
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 7.8e-31 137.9 80 81.2
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.9e-29 133.3 175 41.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.1e-28 129.8 179 38.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.8e-27 124.8 67 83.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.4e-24 116.3 75 73.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.4e-24 116.3 75 73.3
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.6e-21 105.1 57 80.7
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.6e-20 103.6 100 52.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 3.6e-20 102.4 62 77.4
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.5e-18 97.1 54 83.3
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.8e-18 95.1 55 76.4
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.3e-17 94.0 209 34.4
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 4.9e-17 92.0 144 36.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.3e-14 83.2 157 31.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 2.5e-13 79.7 90 48.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.1e-11 72.8 88 47.7
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-10 70.1 37 86.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.8e-10 68.6 73 53.4
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 9.9e-10 67.8 49 63.3
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.3e-09 67.4 51 64.7
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-08 63.9 50 64.0
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 3.2e-08 62.8 38 78.9
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.2e-08 62.4 42 73.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 2.7e-07 59.7 38 68.4
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.7e-07 59.7 38 68.4
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 4.6e-07 58.9 43 62.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 6.0e-07 58.5 42 66.7


User provided reference genes

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